Echinochloa oryzicola (echinochloa_oryzicola)
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Imported from atlas release summary for Echinochloa oryzicola.
2857
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2857
Candidate Genes
C4H
6.99%
C3'H/CYP98A
6.75%
BAHD
6.12%
POD
4.55%
T3O
4.04%
CYP76
3.82%
IFS
3.78%
4CL
3.65%
Other Families
60.3%
More Families (98)
F3'H/CYP75B
229
2.81%
DWF4/CYP90B1
216
2.65%
BR6OX2/CYP85A2
206
2.53%
UGT
192
2.36%
CYP71
182
2.24%
F3H
177
2.17%
7DLGT
169
2.08%
UFGT
166
2.04%
NMT
140
1.72%
SMT1/SMT2/SMT3
129
1.58%
STR
120
1.47%
H6H
91
1.12%
CODM/T6ODM
87
1.07%
SLS
86
1.06%
LAC
86
1.06%
PYKS
85
1.04%
CAD
85
1.04%
HCT
85
1.04%
COMT
84
1.03%
G8O/G8H
83
1.02%
TRI/TRII
83
1.02%
RAS
82
1.01%
CCR
81
1.0%
T16H
79
0.97%
PMT
75
0.92%
CSE
74
0.91%
CAS
73
0.9%
TPS
73
0.9%
IFR
71
0.87%
16OMT
70
0.86%
NCS
69
0.85%
SGD
67
0.82%
GES
64
0.79%
CYP90D1
64
0.79%
FNS
63
0.77%
F5H/CYP84A
62
0.76%
ANR
61
0.75%
GS
52
0.64%
CHS
51
0.63%
PAL
51
0.63%
F3'5'H/CYP75A
50
0.61%
CYP51G1
50
0.61%
CPD/CYP90A1
47
0.58%
COR
46
0.57%
DFR
42
0.52%
7DLH
31
0.38%
IO
31
0.38%
TYDC_DDC
28
0.34%
BBE
28
0.34%
BR6OX1/CYP85A1
28
0.34%
CNMT
27
0.33%
CYP80B1
23
0.28%
8HGO
23
0.28%
FPPS
22
0.27%
CYP719
18
0.22%
ANS/LDOX
17
0.21%
TAT
17
0.21%
MVK
16
0.2%
GGPPS
16
0.2%
CPR
15
0.18%
MPO
14
0.17%
LAMT
14
0.17%
ROT3/CYP90C1
14
0.17%
ISY
13
0.16%
XMT_MXMT_DXMT
12
0.15%
TDC
12
0.15%
CCoAOMT
12
0.15%
SMO1/SMO2
12
0.15%
HPPR
11
0.14%
CHI
10
0.12%
SQS/FDFT1
10
0.12%
AACT
10
0.12%
MVD
10
0.12%
DET2
9
0.11%
HMGR
9
0.11%
MCT/IspD
8
0.1%
CYP80F1
7
0.09%
DWF1
7
0.09%
IDI
7
0.09%
ODC
6
0.07%
HYD1
6
0.07%
DXS
6
0.07%
ADC
5
0.06%
FLS
5
0.06%
HDR/IspH
5
0.06%
6OMT_4OMT_SOMT
4
0.05%
FK
4
0.05%
HMGS
4
0.05%
MDS/IspF
4
0.05%
SQE
3
0.04%
PMK
3
0.04%
CMK/IspE
3
0.04%
DWF7
2
0.02%
CPI1
2
0.02%
DWF5
2
0.02%
DXR
2
0.02%
HDS/IspG
2
0.02%
GPPS
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 735 | 19 | BAHD (329) | View species results |
| Phenylpropanoid pathway | 696 | 12 | POD (326) | View species results |
| Alkaloid pathway | 626 | 23 | 7DLGT (78) | View species results |
| Flavonoid pathway | 326 | 14 | UFGT (144) | View species results |
| Rosmarinic acid pathway | 311 | 7 | C4H (166) | View species results |
| Steroid pathway | 163 | 13 | SMT1/SMT2/SMT3 (71) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3572 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 665 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| echinochloa_oryzicola_GWHPBDNS028902 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS029030 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS030438 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS030700 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| echinochloa_oryzicola_GWHPBDNS030993 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS031200 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS031201 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS032382 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS033529 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS033967 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| echinochloa_oryzicola_GWHPBDNS034960 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS035318 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS035853 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS036411 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| echinochloa_oryzicola_GWHPBDNS037040 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| echinochloa_oryzicola_GWHPBDNS037424 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS037425 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS037568 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| echinochloa_oryzicola_GWHPBDNS037658 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS038317 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS039375 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS041113 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS041115 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS041117 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS041156 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS041252 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS041255 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS041797 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS044397 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS044883 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS045030 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| echinochloa_oryzicola_GWHPBDNS045254 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS046353 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| echinochloa_oryzicola_GWHPBDNS046431 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS046432 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS046826 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| echinochloa_oryzicola_GWHPBDNS047540 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| echinochloa_oryzicola_GWHPBDNS047836 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS049897 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS049941 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| echinochloa_oryzicola_GWHPBDNS049999 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| echinochloa_oryzicola_GWHPBDNS050227 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS050565 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| echinochloa_oryzicola_GWHPBDNS050754 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| echinochloa_oryzicola_GWHPBDNS050871 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS050874 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS051242 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| echinochloa_oryzicola_GWHPBDNS052933 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS053468 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| echinochloa_oryzicola_GWHPBDNS055918 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |