PlantSME Plant secondary metabolism enzyme database

Fissidens javanicus (fissidens_javanicus)

Imported from atlas release summary for Fissidens javanicus.

686
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.68% Terpenoid pathway 24.64% Alkaloid pathway 19.83% Flavonoid pathway 13.56% Rosmarinic acid pathway 10.06% Steroid pathway 5.25%
Family Distribution
C4H 6.18% BAHD 6.18% C3'H/CYP98A 6.13% POD 5.73% CYP76 4.54% 4CL 4.42% IFS 3.46% NMT 3.35%
Other Families 60.01%
More Families (95)
BR6OX2/CYP85A2 45 2.55% F3H 44 2.5% STR 43 2.44% T3O 40 2.27% PYKS 38 2.16% DWF4/CYP90B1 36 2.04% IFR 34 1.93% GS 32 1.82% CODM/T6ODM 31 1.76% UGT 31 1.76% CHS 29 1.64% 7DLGT 28 1.59% IO 28 1.59% F3'H/CYP75B 28 1.59% UFGT 27 1.53% PAL 27 1.53% LAC 21 1.19% SMT1/SMT2/SMT3 21 1.19% HCT 20 1.13% CAD 19 1.08% T16H 18 1.02% H6H 18 1.02% F3'5'H/CYP75A 17 0.96% RAS 16 0.91% CYP90D1 15 0.85% SLS 14 0.79% TRI/TRII 14 0.79% CYP71 14 0.79% FNS 13 0.74% COMT 13 0.74% CAS 11 0.62% G8O/G8H 10 0.57% SGD 9 0.51% 16OMT 9 0.51% TDC 9 0.51% CSE 9 0.51% F5H/CYP84A 9 0.51% 7DLH 8 0.45% NCS 8 0.45% LAMT 8 0.45% CNMT 8 0.45% ANR 8 0.45% COR 7 0.4% TAT 7 0.4% CPD/CYP90A1 7 0.4% CCR 6 0.34% CPR 6 0.34% AACT 6 0.34% PMT 5 0.28% CYP80B1 5 0.28% ADC 5 0.28% BBE 5 0.28% 8HGO 5 0.28% DFR 5 0.28% ROT3/CYP90C1 5 0.28% SQS/FDFT1 5 0.28% DET2 5 0.28% BR6OX1/CYP85A1 5 0.28% ISY 4 0.23% MPO 4 0.23% ANS/LDOX 4 0.23% HDS/IspG 4 0.23% GGPPS 4 0.23% CMK/IspE 4 0.23% FPPS 4 0.23% TYDC_DDC 3 0.17% CHI 3 0.17% FLS 3 0.17% SQE 3 0.17% DWF5 3 0.17% CPI1 3 0.17% DXS 3 0.17% MVK 3 0.17% MCT/IspD 3 0.17% TPS 3 0.17% MVD 3 0.17% 6OMT_4OMT_SOMT 2 0.11% CCoAOMT 2 0.11% HPPR 2 0.11% FK 2 0.11% SMO1/SMO2 2 0.11% CYP51G1 2 0.11% HMGS 2 0.11% MDS/IspF 2 0.11% DXR 2 0.11% CYP719 1 0.06% CYP80F1 1 0.06% GES 1 0.06% DWF1 1 0.06% DWF7 1 0.06% HYD1 1 0.06% HMGR 1 0.06% PMK 1 0.06% IDI 1 0.06% HDR/IspH 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 183 11 POD (92) View species results
Terpenoid pathway 169 18 BAHD (72) View species results
Alkaloid pathway 136 16 PYKS (27) View species results
Flavonoid pathway 93 10 CHS (28) View species results
Rosmarinic acid pathway 69 7 C4H (25) View species results
Steroid pathway 36 12 CAS (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 666 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 145 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Gene Pathway Family Confidence Status Best Target
Fjavscaffold_100037280 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Fjavscaffold_100044960 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
Fjavscaffold_120058600 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Fjavscaffold_30144200 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
Fjavscaffold_30148790 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Fjavscaffold_40156460 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
Fjavscaffold_40165910 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Fjavscaffold_50182600 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
Fjavscaffold_60209280 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Fjavscaffold_70235750 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Fjavscaffold_90269210 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL