Fissidens javanicus (fissidens_javanicus)
Imported from atlas release summary for Fissidens javanicus.
686
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
686
Candidate Genes
C4H
6.18%
BAHD
6.18%
C3'H/CYP98A
6.13%
POD
5.73%
CYP76
4.54%
4CL
4.42%
IFS
3.46%
NMT
3.35%
Other Families
60.01%
More Families (95)
BR6OX2/CYP85A2
45
2.55%
F3H
44
2.5%
STR
43
2.44%
T3O
40
2.27%
PYKS
38
2.16%
DWF4/CYP90B1
36
2.04%
IFR
34
1.93%
GS
32
1.82%
CODM/T6ODM
31
1.76%
UGT
31
1.76%
CHS
29
1.64%
7DLGT
28
1.59%
IO
28
1.59%
F3'H/CYP75B
28
1.59%
UFGT
27
1.53%
PAL
27
1.53%
LAC
21
1.19%
SMT1/SMT2/SMT3
21
1.19%
HCT
20
1.13%
CAD
19
1.08%
T16H
18
1.02%
H6H
18
1.02%
F3'5'H/CYP75A
17
0.96%
RAS
16
0.91%
CYP90D1
15
0.85%
SLS
14
0.79%
TRI/TRII
14
0.79%
CYP71
14
0.79%
FNS
13
0.74%
COMT
13
0.74%
CAS
11
0.62%
G8O/G8H
10
0.57%
SGD
9
0.51%
16OMT
9
0.51%
TDC
9
0.51%
CSE
9
0.51%
F5H/CYP84A
9
0.51%
7DLH
8
0.45%
NCS
8
0.45%
LAMT
8
0.45%
CNMT
8
0.45%
ANR
8
0.45%
COR
7
0.4%
TAT
7
0.4%
CPD/CYP90A1
7
0.4%
CCR
6
0.34%
CPR
6
0.34%
AACT
6
0.34%
PMT
5
0.28%
CYP80B1
5
0.28%
ADC
5
0.28%
BBE
5
0.28%
8HGO
5
0.28%
DFR
5
0.28%
ROT3/CYP90C1
5
0.28%
SQS/FDFT1
5
0.28%
DET2
5
0.28%
BR6OX1/CYP85A1
5
0.28%
ISY
4
0.23%
MPO
4
0.23%
ANS/LDOX
4
0.23%
HDS/IspG
4
0.23%
GGPPS
4
0.23%
CMK/IspE
4
0.23%
FPPS
4
0.23%
TYDC_DDC
3
0.17%
CHI
3
0.17%
FLS
3
0.17%
SQE
3
0.17%
DWF5
3
0.17%
CPI1
3
0.17%
DXS
3
0.17%
MVK
3
0.17%
MCT/IspD
3
0.17%
TPS
3
0.17%
MVD
3
0.17%
6OMT_4OMT_SOMT
2
0.11%
CCoAOMT
2
0.11%
HPPR
2
0.11%
FK
2
0.11%
SMO1/SMO2
2
0.11%
CYP51G1
2
0.11%
HMGS
2
0.11%
MDS/IspF
2
0.11%
DXR
2
0.11%
CYP719
1
0.06%
CYP80F1
1
0.06%
GES
1
0.06%
DWF1
1
0.06%
DWF7
1
0.06%
HYD1
1
0.06%
HMGR
1
0.06%
PMK
1
0.06%
IDI
1
0.06%
HDR/IspH
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 183 | 11 | POD (92) | View species results |
| Terpenoid pathway | 169 | 18 | BAHD (72) | View species results |
| Alkaloid pathway | 136 | 16 | PYKS (27) | View species results |
| Flavonoid pathway | 93 | 10 | CHS (28) | View species results |
| Rosmarinic acid pathway | 69 | 7 | C4H (25) | View species results |
| Steroid pathway | 36 | 12 | CAS (10) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 666 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 145 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Fjavscaffold_10002650 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_100030400 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_100037670 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_100038580 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Fjavscaffold_10004000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_100041190 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_100045280 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_10008400 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Fjavscaffold_10018770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_10018780 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_110048000 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_110050340 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_110050900 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_120061480 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_120061490 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_120063140 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_20097440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_20112220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_20112990 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Fjavscaffold_20114080 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_30118910 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_30120230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_40154150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_40157620 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_40163060 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_40164490 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_40166020 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_40166920 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Fjavscaffold_40169380 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Fjavscaffold_40171100 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_40171680 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_50177410 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Fjavscaffold_50181380 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_50186250 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_60209840 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_60210910 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_60215470 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Fjavscaffold_60218760 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_80239410 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_80242220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_90256270 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_90264990 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Fjavscaffold_90270430 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |