PlantSME Plant secondary metabolism enzyme database

Fissidens javanicus (fissidens_javanicus)

Imported from atlas release summary for Fissidens javanicus.

686
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.68% Terpenoid pathway 24.64% Alkaloid pathway 19.83% Flavonoid pathway 13.56% Rosmarinic acid pathway 10.06% Steroid pathway 5.25%
Family Distribution
C4H 6.18% BAHD 6.18% C3'H/CYP98A 6.13% POD 5.73% CYP76 4.54% 4CL 4.42% IFS 3.46% NMT 3.35%
Other Families 60.01%
More Families (95)
BR6OX2/CYP85A2 45 2.55% F3H 44 2.5% STR 43 2.44% T3O 40 2.27% PYKS 38 2.16% DWF4/CYP90B1 36 2.04% IFR 34 1.93% GS 32 1.82% CODM/T6ODM 31 1.76% UGT 31 1.76% CHS 29 1.64% 7DLGT 28 1.59% IO 28 1.59% F3'H/CYP75B 28 1.59% UFGT 27 1.53% PAL 27 1.53% LAC 21 1.19% SMT1/SMT2/SMT3 21 1.19% HCT 20 1.13% CAD 19 1.08% T16H 18 1.02% H6H 18 1.02% F3'5'H/CYP75A 17 0.96% RAS 16 0.91% CYP90D1 15 0.85% SLS 14 0.79% TRI/TRII 14 0.79% CYP71 14 0.79% FNS 13 0.74% COMT 13 0.74% CAS 11 0.62% G8O/G8H 10 0.57% SGD 9 0.51% 16OMT 9 0.51% TDC 9 0.51% CSE 9 0.51% F5H/CYP84A 9 0.51% 7DLH 8 0.45% NCS 8 0.45% LAMT 8 0.45% CNMT 8 0.45% ANR 8 0.45% COR 7 0.4% TAT 7 0.4% CPD/CYP90A1 7 0.4% CCR 6 0.34% CPR 6 0.34% AACT 6 0.34% PMT 5 0.28% CYP80B1 5 0.28% ADC 5 0.28% BBE 5 0.28% 8HGO 5 0.28% DFR 5 0.28% ROT3/CYP90C1 5 0.28% SQS/FDFT1 5 0.28% DET2 5 0.28% BR6OX1/CYP85A1 5 0.28% ISY 4 0.23% MPO 4 0.23% ANS/LDOX 4 0.23% HDS/IspG 4 0.23% GGPPS 4 0.23% CMK/IspE 4 0.23% FPPS 4 0.23% TYDC_DDC 3 0.17% CHI 3 0.17% FLS 3 0.17% SQE 3 0.17% DWF5 3 0.17% CPI1 3 0.17% DXS 3 0.17% MVK 3 0.17% MCT/IspD 3 0.17% TPS 3 0.17% MVD 3 0.17% 6OMT_4OMT_SOMT 2 0.11% CCoAOMT 2 0.11% HPPR 2 0.11% FK 2 0.11% SMO1/SMO2 2 0.11% CYP51G1 2 0.11% HMGS 2 0.11% MDS/IspF 2 0.11% DXR 2 0.11% CYP719 1 0.06% CYP80F1 1 0.06% GES 1 0.06% DWF1 1 0.06% DWF7 1 0.06% HYD1 1 0.06% HMGR 1 0.06% PMK 1 0.06% IDI 1 0.06% HDR/IspH 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 183 11 POD (92) View species results
Terpenoid pathway 169 18 BAHD (72) View species results
Alkaloid pathway 136 16 PYKS (27) View species results
Flavonoid pathway 93 10 CHS (28) View species results
Rosmarinic acid pathway 69 7 C4H (25) View species results
Steroid pathway 36 12 CAS (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 666 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 145 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Fjavscaffold_70227580 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Fjavscaffold_70227890 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH
Fjavscaffold_80237690 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Fjavscaffold_80242540 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Fjavscaffold_80248420 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Fjavscaffold_80253650 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Fjavscaffold_90262430 Alkaloid NMT low borderline NMT__00019__sp_O22781_SUVH2_ARATH
Fjavscaffold_90269510 Alkaloid NMT low borderline NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Fjavscaffold_90272360 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH