Fissidens javanicus (fissidens_javanicus)
Imported from atlas release summary for Fissidens javanicus.
937
Candidate Protein Records
686
Pathway-Level Records
1763
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1763
Family-Level Calls
C4H
6.18%
BAHD
6.18%
C3'H/CYP98A
6.13%
POD
5.73%
CYP76
4.54%
4CL
4.42%
IFS
3.46%
NMT
3.35%
Other Families
60.01%
More Families (95)
BR6OX2/CYP85A2
45
2.55%
F3H
44
2.5%
STR
43
2.44%
T3O
40
2.27%
PYKS
38
2.16%
DWF4/CYP90B1
36
2.04%
IFR
34
1.93%
GS
32
1.82%
CODM/T6ODM
31
1.76%
UGT
31
1.76%
CHS
29
1.64%
7DLGT
28
1.59%
IO
28
1.59%
F3'H/CYP75B
28
1.59%
UFGT
27
1.53%
PAL
27
1.53%
LAC
21
1.19%
SMT1/SMT2/SMT3
21
1.19%
HCT
20
1.13%
CAD
19
1.08%
T16H
18
1.02%
H6H
18
1.02%
F3'5'H/CYP75A
17
0.96%
RAS
16
0.91%
CYP90D1
15
0.85%
SLS
14
0.79%
TRI/TRII
14
0.79%
CYP71
14
0.79%
FNS
13
0.74%
COMT
13
0.74%
CAS
11
0.62%
G8O/G8H
10
0.57%
SGD
9
0.51%
16OMT
9
0.51%
TDC
9
0.51%
CSE
9
0.51%
F5H/CYP84A
9
0.51%
7DLH
8
0.45%
NCS
8
0.45%
LAMT
8
0.45%
CNMT
8
0.45%
ANR
8
0.45%
COR
7
0.4%
TAT
7
0.4%
CPD/CYP90A1
7
0.4%
CCR
6
0.34%
CPR
6
0.34%
AACT
6
0.34%
PMT
5
0.28%
CYP80B1
5
0.28%
ADC
5
0.28%
BBE
5
0.28%
8HGO
5
0.28%
DFR
5
0.28%
ROT3/CYP90C1
5
0.28%
SQS/FDFT1
5
0.28%
DET2
5
0.28%
BR6OX1/CYP85A1
5
0.28%
ISY
4
0.23%
MPO
4
0.23%
ANS/LDOX
4
0.23%
HDS/IspG
4
0.23%
GGPPS
4
0.23%
CMK/IspE
4
0.23%
FPPS
4
0.23%
TYDC_DDC
3
0.17%
CHI
3
0.17%
FLS
3
0.17%
SQE
3
0.17%
DWF5
3
0.17%
CPI1
3
0.17%
DXS
3
0.17%
MVK
3
0.17%
MCT/IspD
3
0.17%
TPS
3
0.17%
MVD
3
0.17%
6OMT_4OMT_SOMT
2
0.11%
CCoAOMT
2
0.11%
HPPR
2
0.11%
FK
2
0.11%
SMO1/SMO2
2
0.11%
CYP51G1
2
0.11%
HMGS
2
0.11%
MDS/IspF
2
0.11%
DXR
2
0.11%
CYP719
1
0.06%
CYP80F1
1
0.06%
GES
1
0.06%
DWF1
1
0.06%
DWF7
1
0.06%
HYD1
1
0.06%
HMGR
1
0.06%
PMK
1
0.06%
IDI
1
0.06%
HDR/IspH
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 183 | 11 | POD (92) | View species results |
| Terpenoid pathway | 169 | 18 | BAHD (72) | View species results |
| Alkaloid pathway | 136 | 16 | PYKS (27) | View species results |
| Flavonoid pathway | 93 | 10 | CHS (28) | View species results |
| Rosmarinic acid pathway | 69 | 7 | C4H (25) | View species results |
| Steroid pathway | 36 | 12 | CAS (10) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 666 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 145 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Fjavscaffold_90268780 | Alkaloid | T3O | low | borderline |
| Fjavscaffold_90269300 | Alkaloid | T3O | medium | borderline |
| Fjavscaffold_90269320 | Alkaloid | T3O | medium | borderline |
| Fjavscaffold_90272030 | Alkaloid | T3O | low | borderline |
| Fjavscaffold_190089290 | Alkaloid | TDC | low | borderline |
| Fjavscaffold_20092100 | Alkaloid | TDC | medium | borderline |
| Fjavscaffold_20096950 | Alkaloid | TDC | low | borderline |
| Fjavscaffold_30126580 | Alkaloid | TDC | low | borderline |
| Fjavscaffold_30139390 | Alkaloid | TDC | low | borderline |
| Fjavscaffold_30140240 | Alkaloid | TDC | low | borderline |
| Fjavscaffold_40156360 | Alkaloid | TDC | low | borderline |
| Fjavscaffold_50195170 | Alkaloid | TDC | low | borderline |
| Fjavscaffold_80244110 | Alkaloid | TDC | low | borderline |
| Fjavscaffold_100037720 | Alkaloid | TRI/TRII | medium | pass |
| Fjavscaffold_100040970 | Alkaloid | TRI/TRII | medium | pass |
| Fjavscaffold_100044890 | Alkaloid | TRI/TRII | medium | pass |
| Fjavscaffold_10014640 | Alkaloid | TRI/TRII | low | borderline |
| Fjavscaffold_10019760 | Alkaloid | TRI/TRII | medium | pass |
| Fjavscaffold_30117710 | Alkaloid | TRI/TRII | low | borderline |
| Fjavscaffold_30119780 | Alkaloid | TRI/TRII | medium | pass |
| Fjavscaffold_40154030 | Alkaloid | TRI/TRII | medium | pass |
| Fjavscaffold_50175040 | Alkaloid | TRI/TRII | low | borderline |
| Fjavscaffold_60216070 | Alkaloid | TRI/TRII | medium | pass |
| Fjavscaffold_80255260 | Alkaloid | TRI/TRII | medium | pass |
| Fjavscaffold_90259300 | Alkaloid | TRI/TRII | medium | pass |
| Fjavscaffold_90262690 | Alkaloid | TRI/TRII | low | borderline |
| Fjavscaffold_90268340 | Alkaloid | TRI/TRII | low | borderline |
| Fjavscaffold_20092110 | Alkaloid | TYDC_DDC | medium | borderline |
| Fjavscaffold_30150170 | Alkaloid | TYDC_DDC | medium | borderline |
| Fjavscaffold_70234470 | Alkaloid | TYDC_DDC | medium | borderline |