Fraxinus pennsylvanica (fraxinus_pennsylvanica)
Imported from atlas release summary for Fraxinus pennsylvanica.
2356
Candidate Protein Records
2074
Pathway-Level Records
4736
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4736
Family-Level Calls
BAHD
6.08%
C4H
5.43%
UGT
5.24%
7DLGT
4.81%
C3'H/CYP98A
4.75%
UFGT
4.54%
POD
3.8%
CYP76
3.65%
Other Families
61.7%
More Families (95)
4CL
153
3.23%
F3H
144
3.04%
IFS
135
2.85%
T3O
114
2.41%
CAD
108
2.28%
DWF4/CYP90B1
106
2.24%
F3'H/CYP75B
96
2.03%
NMT
88
1.86%
SMT1/SMT2/SMT3
87
1.84%
CODM/T6ODM
84
1.77%
STR
78
1.65%
H6H
76
1.6%
TPS
75
1.58%
CAS
74
1.56%
GES
69
1.46%
LAC
67
1.41%
TRI/TRII
60
1.27%
BR6OX2/CYP85A2
58
1.22%
SGD
57
1.2%
T16H
56
1.18%
IFR
48
1.01%
GS
47
0.99%
CSE
47
0.99%
PYKS
46
0.97%
HCT
40
0.84%
CYP71
40
0.84%
G8O/G8H
38
0.8%
IO
36
0.76%
PAL
33
0.7%
CPD/CYP90A1
33
0.7%
PMT
32
0.68%
F3'5'H/CYP75A
32
0.68%
COMT
30
0.63%
F5H/CYP84A
30
0.63%
RAS
30
0.63%
CYP90D1
30
0.63%
TAT
29
0.61%
ANR
24
0.51%
FNS
24
0.51%
SLS
23
0.49%
16OMT
22
0.46%
NCS
20
0.42%
LAMT
20
0.42%
7DLH
20
0.42%
8HGO
20
0.42%
CCR
19
0.4%
ANS/LDOX
17
0.36%
CPR
16
0.34%
DFR
13
0.27%
SQE
13
0.27%
SQS/FDFT1
13
0.27%
GGPPS
13
0.27%
MPO
12
0.25%
BR6OX1/CYP85A1
12
0.25%
CYP719
11
0.23%
COR
11
0.23%
CNMT
11
0.23%
FPPS
11
0.23%
CYP80B1
10
0.21%
HPPR
10
0.21%
ISY
9
0.19%
CYP51G1
9
0.19%
AACT
9
0.19%
HMGR
9
0.19%
MVD
9
0.19%
CHS
8
0.17%
CCoAOMT
8
0.17%
SMO1/SMO2
8
0.17%
ADC
6
0.13%
ROT3/CYP90C1
6
0.13%
DXS
6
0.13%
CHI
5
0.11%
HDR/IspH
5
0.11%
HMGS
5
0.11%
TYDC_DDC
4
0.08%
DWF1
4
0.08%
MVK
4
0.08%
DXR
4
0.08%
TDC
3
0.06%
HYD1
3
0.06%
CPI1
3
0.06%
CMK/IspE
3
0.06%
CYP80F1
2
0.04%
XMT_MXMT_DXMT
2
0.04%
6OMT_4OMT_SOMT
2
0.04%
BBE
2
0.04%
DET2
2
0.04%
DWF7
2
0.04%
IDI
2
0.04%
MDS/IspF
2
0.04%
ODC
1
0.02%
FK
1
0.02%
DWF5
1
0.02%
HDS/IspG
1
0.02%
MCT/IspD
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 652 | 18 | BAHD (235) | View species results |
| Alkaloid pathway | 476 | 22 | 7DLGT (97) | View species results |
| Phenylpropanoid pathway | 394 | 11 | POD (155) | View species results |
| Flavonoid pathway | 283 | 12 | UFGT (197) | View species results |
| Steroid pathway | 147 | 10 | SMT1/SMT2/SMT3 (60) | View species results |
| Rosmarinic acid pathway | 122 | 7 | C4H (33) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1552 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 358 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| fraxinus_pennsylvanica_Fp_g48749 | Alkaloid | 7DLGT | low | borderline |
| fraxinus_pennsylvanica_Fp_g48922 | Alkaloid | 7DLGT | medium | pass |
| fraxinus_pennsylvanica_Fp_g48931 | Alkaloid | 7DLGT | high | pass |
| fraxinus_pennsylvanica_Fp_g49168 | Alkaloid | 7DLGT | low | borderline |
| fraxinus_pennsylvanica_Fp_g49321 | Alkaloid | 7DLGT | low | borderline |
| fraxinus_pennsylvanica_Fp_g49324 | Alkaloid | 7DLGT | low | borderline |
| fraxinus_pennsylvanica_Fp_g49334 | Alkaloid | 7DLGT | low | borderline |
| fraxinus_pennsylvanica_Fp_g49932 | Alkaloid | 7DLGT | low | borderline |
| fraxinus_pennsylvanica_Fp_g5137 | Alkaloid | 7DLGT | high | pass |
| fraxinus_pennsylvanica_Fp_g5441 | Alkaloid | 7DLGT | low | borderline |
| fraxinus_pennsylvanica_Fp_g580 | Alkaloid | 7DLGT | medium | pass |
| fraxinus_pennsylvanica_Fp_g582 | Alkaloid | 7DLGT | medium | pass |
| fraxinus_pennsylvanica_Fp_g6745 | Alkaloid | 7DLGT | medium | pass |
| fraxinus_pennsylvanica_Fp_g6904 | Alkaloid | 7DLGT | low | borderline |
| fraxinus_pennsylvanica_Fp_g6935 | Alkaloid | 7DLGT | low | borderline |
| fraxinus_pennsylvanica_Fp_g765 | Alkaloid | 7DLGT | low | borderline |
| fraxinus_pennsylvanica_Fp_g7882 | Alkaloid | 7DLGT | low | borderline |
| fraxinus_pennsylvanica_Fp_g7930 | Alkaloid | 7DLGT | low | borderline |
| fraxinus_pennsylvanica_Fp_g7954 | Alkaloid | 7DLGT | low | borderline |
| fraxinus_pennsylvanica_Fp_g7958 | Alkaloid | 7DLGT | low | borderline |
| fraxinus_pennsylvanica_Fp_g806 | Alkaloid | 7DLGT | medium | pass |
| fraxinus_pennsylvanica_Fp_g807 | Alkaloid | 7DLGT | high | pass |
| fraxinus_pennsylvanica_Fp_g808 | Alkaloid | 7DLGT | medium | pass |
| fraxinus_pennsylvanica_Fp_g8648 | Alkaloid | 7DLGT | low | borderline |
| fraxinus_pennsylvanica_Fp_g9041 | Alkaloid | 7DLGT | low | borderline |
| fraxinus_pennsylvanica_Fp_g9297 | Alkaloid | 7DLGT | medium | pass |
| fraxinus_pennsylvanica_Fp_g9818 | Alkaloid | 7DLGT | low | borderline |
| fraxinus_pennsylvanica_Fp_g9989 | Alkaloid | 7DLGT | low | borderline |