PlantSME Plant secondary metabolism enzyme database

Fraxinus pennsylvanica (fraxinus_pennsylvanica)

Imported from atlas release summary for Fraxinus pennsylvanica.

2074
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.44% Alkaloid pathway 22.95% Phenylpropanoid pathway 19.0% Flavonoid pathway 13.65% Steroid pathway 7.09% Rosmarinic acid pathway 5.88%
Family Distribution
BAHD 6.08% C4H 5.43% UGT 5.24% 7DLGT 4.81% C3'H/CYP98A 4.75% UFGT 4.54% POD 3.8% CYP76 3.65%
Other Families 61.7%
More Families (95)
4CL 153 3.23% F3H 144 3.04% IFS 135 2.85% T3O 114 2.41% CAD 108 2.28% DWF4/CYP90B1 106 2.24% F3'H/CYP75B 96 2.03% NMT 88 1.86% SMT1/SMT2/SMT3 87 1.84% CODM/T6ODM 84 1.77% STR 78 1.65% H6H 76 1.6% TPS 75 1.58% CAS 74 1.56% GES 69 1.46% LAC 67 1.41% TRI/TRII 60 1.27% BR6OX2/CYP85A2 58 1.22% SGD 57 1.2% T16H 56 1.18% IFR 48 1.01% GS 47 0.99% CSE 47 0.99% PYKS 46 0.97% HCT 40 0.84% CYP71 40 0.84% G8O/G8H 38 0.8% IO 36 0.76% PAL 33 0.7% CPD/CYP90A1 33 0.7% PMT 32 0.68% F3'5'H/CYP75A 32 0.68% COMT 30 0.63% F5H/CYP84A 30 0.63% RAS 30 0.63% CYP90D1 30 0.63% TAT 29 0.61% ANR 24 0.51% FNS 24 0.51% SLS 23 0.49% 16OMT 22 0.46% NCS 20 0.42% LAMT 20 0.42% 7DLH 20 0.42% 8HGO 20 0.42% CCR 19 0.4% ANS/LDOX 17 0.36% CPR 16 0.34% DFR 13 0.27% SQE 13 0.27% SQS/FDFT1 13 0.27% GGPPS 13 0.27% MPO 12 0.25% BR6OX1/CYP85A1 12 0.25% CYP719 11 0.23% COR 11 0.23% CNMT 11 0.23% FPPS 11 0.23% CYP80B1 10 0.21% HPPR 10 0.21% ISY 9 0.19% CYP51G1 9 0.19% AACT 9 0.19% HMGR 9 0.19% MVD 9 0.19% CHS 8 0.17% CCoAOMT 8 0.17% SMO1/SMO2 8 0.17% ADC 6 0.13% ROT3/CYP90C1 6 0.13% DXS 6 0.13% CHI 5 0.11% HDR/IspH 5 0.11% HMGS 5 0.11% TYDC_DDC 4 0.08% DWF1 4 0.08% MVK 4 0.08% DXR 4 0.08% TDC 3 0.06% HYD1 3 0.06% CPI1 3 0.06% CMK/IspE 3 0.06% CYP80F1 2 0.04% XMT_MXMT_DXMT 2 0.04% 6OMT_4OMT_SOMT 2 0.04% BBE 2 0.04% DET2 2 0.04% DWF7 2 0.04% IDI 2 0.04% MDS/IspF 2 0.04% ODC 1 0.02% FK 1 0.02% DWF5 1 0.02% HDS/IspG 1 0.02% MCT/IspD 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 652 18 BAHD (235) View species results
Alkaloid pathway 476 22 7DLGT (97) View species results
Phenylpropanoid pathway 394 11 POD (155) View species results
Flavonoid pathway 283 12 UFGT (197) View species results
Steroid pathway 147 10 SMT1/SMT2/SMT3 (60) View species results
Rosmarinic acid pathway 122 7 C4H (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1552 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 358 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
Reset
Gene Pathway Family Confidence Status
fraxinus_pennsylvanica_Fp_g24987 Terpenoid FPPS medium borderline
fraxinus_pennsylvanica_Fp_g29038 Terpenoid FPPS medium pass
fraxinus_pennsylvanica_Fp_g30828 Terpenoid FPPS medium pass
fraxinus_pennsylvanica_Fp_g30829 Terpenoid FPPS medium pass
fraxinus_pennsylvanica_Fp_g33796 Terpenoid FPPS low borderline
fraxinus_pennsylvanica_Fp_g3531 Terpenoid FPPS medium pass
fraxinus_pennsylvanica_Fp_g35410 Terpenoid FPPS medium pass
fraxinus_pennsylvanica_Fp_g37573 Terpenoid FPPS medium pass
fraxinus_pennsylvanica_Fp_g39015 Terpenoid FPPS low borderline
fraxinus_pennsylvanica_Fp_g44545 Terpenoid FPPS medium borderline
fraxinus_pennsylvanica_Fp_g8245 Terpenoid FPPS medium borderline