Fraxinus pennsylvanica (fraxinus_pennsylvanica)
Imported from atlas release summary for Fraxinus pennsylvanica.
2074
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2074
Candidate Genes
BAHD
6.08%
C4H
5.43%
UGT
5.24%
7DLGT
4.81%
C3'H/CYP98A
4.75%
UFGT
4.54%
POD
3.8%
CYP76
3.65%
Other Families
61.7%
More Families (95)
4CL
153
3.23%
F3H
144
3.04%
IFS
135
2.85%
T3O
114
2.41%
CAD
108
2.28%
DWF4/CYP90B1
106
2.24%
F3'H/CYP75B
96
2.03%
NMT
88
1.86%
SMT1/SMT2/SMT3
87
1.84%
CODM/T6ODM
84
1.77%
STR
78
1.65%
H6H
76
1.6%
TPS
75
1.58%
CAS
74
1.56%
GES
69
1.46%
LAC
67
1.41%
TRI/TRII
60
1.27%
BR6OX2/CYP85A2
58
1.22%
SGD
57
1.2%
T16H
56
1.18%
IFR
48
1.01%
GS
47
0.99%
CSE
47
0.99%
PYKS
46
0.97%
HCT
40
0.84%
CYP71
40
0.84%
G8O/G8H
38
0.8%
IO
36
0.76%
PAL
33
0.7%
CPD/CYP90A1
33
0.7%
PMT
32
0.68%
F3'5'H/CYP75A
32
0.68%
COMT
30
0.63%
F5H/CYP84A
30
0.63%
RAS
30
0.63%
CYP90D1
30
0.63%
TAT
29
0.61%
ANR
24
0.51%
FNS
24
0.51%
SLS
23
0.49%
16OMT
22
0.46%
NCS
20
0.42%
LAMT
20
0.42%
7DLH
20
0.42%
8HGO
20
0.42%
CCR
19
0.4%
ANS/LDOX
17
0.36%
CPR
16
0.34%
DFR
13
0.27%
SQE
13
0.27%
SQS/FDFT1
13
0.27%
GGPPS
13
0.27%
MPO
12
0.25%
BR6OX1/CYP85A1
12
0.25%
CYP719
11
0.23%
COR
11
0.23%
CNMT
11
0.23%
FPPS
11
0.23%
CYP80B1
10
0.21%
HPPR
10
0.21%
ISY
9
0.19%
CYP51G1
9
0.19%
AACT
9
0.19%
HMGR
9
0.19%
MVD
9
0.19%
CHS
8
0.17%
CCoAOMT
8
0.17%
SMO1/SMO2
8
0.17%
ADC
6
0.13%
ROT3/CYP90C1
6
0.13%
DXS
6
0.13%
CHI
5
0.11%
HDR/IspH
5
0.11%
HMGS
5
0.11%
TYDC_DDC
4
0.08%
DWF1
4
0.08%
MVK
4
0.08%
DXR
4
0.08%
TDC
3
0.06%
HYD1
3
0.06%
CPI1
3
0.06%
CMK/IspE
3
0.06%
CYP80F1
2
0.04%
XMT_MXMT_DXMT
2
0.04%
6OMT_4OMT_SOMT
2
0.04%
BBE
2
0.04%
DET2
2
0.04%
DWF7
2
0.04%
IDI
2
0.04%
MDS/IspF
2
0.04%
ODC
1
0.02%
FK
1
0.02%
DWF5
1
0.02%
HDS/IspG
1
0.02%
MCT/IspD
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 652 | 18 | BAHD (235) | View species results |
| Alkaloid pathway | 476 | 22 | 7DLGT (97) | View species results |
| Phenylpropanoid pathway | 394 | 11 | POD (155) | View species results |
| Flavonoid pathway | 283 | 12 | UFGT (197) | View species results |
| Steroid pathway | 147 | 10 | SMT1/SMT2/SMT3 (60) | View species results |
| Rosmarinic acid pathway | 122 | 7 | C4H (33) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1552 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 358 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SLS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| fraxinus_pennsylvanica_Fp_g13673 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| fraxinus_pennsylvanica_Fp_g20164 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| fraxinus_pennsylvanica_Fp_g20165 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| fraxinus_pennsylvanica_Fp_g21537 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| fraxinus_pennsylvanica_Fp_g27183 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| fraxinus_pennsylvanica_Fp_g27581 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| fraxinus_pennsylvanica_Fp_g30184 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| fraxinus_pennsylvanica_Fp_g39803 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| fraxinus_pennsylvanica_Fp_g40760 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| fraxinus_pennsylvanica_Fp_g40762 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| fraxinus_pennsylvanica_Fp_g40878 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| fraxinus_pennsylvanica_Fp_g42366 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| fraxinus_pennsylvanica_Fp_g44665 | Alkaloid | SLS | low | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| fraxinus_pennsylvanica_Fp_g44768 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| fraxinus_pennsylvanica_Fp_g45305 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| fraxinus_pennsylvanica_Fp_g45306 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| fraxinus_pennsylvanica_Fp_g45716 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| fraxinus_pennsylvanica_Fp_g46138 | Alkaloid | SLS | medium | pass | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| fraxinus_pennsylvanica_Fp_g46142 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| fraxinus_pennsylvanica_Fp_g48756 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| fraxinus_pennsylvanica_Fp_g4945 | Alkaloid | SLS | medium | pass | SLS__00001__sp_Q05047_SLS1_CATRO |
| fraxinus_pennsylvanica_Fp_g6498 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| fraxinus_pennsylvanica_Fp_g9009 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |