PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2126
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLH
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Gene Pathway Family Confidence Status
Gher01G0004410.1 Alkaloid 7DLH medium borderline
Gher01G0004440.1 Alkaloid 7DLH medium borderline
Gher01G0013000.1 Alkaloid 7DLH medium borderline
Gher01G0026480.1 Alkaloid 7DLH medium borderline
Gher02G0006630.1 Alkaloid 7DLH medium borderline
Gher03G0027810.1 Alkaloid 7DLH medium borderline
Gher03G0027820.1 Alkaloid 7DLH medium borderline
Gher03G0027830.1 Alkaloid 7DLH medium borderline
Gher03G0027840.1 Alkaloid 7DLH medium borderline
Gher03G0027850.1 Alkaloid 7DLH medium borderline
Gher03G0027860.1 Alkaloid 7DLH medium borderline
Gher03G0027870.1 Alkaloid 7DLH medium borderline
Gher03G0027880.1 Alkaloid 7DLH medium borderline
Gher03G0027890.1 Alkaloid 7DLH medium borderline
Gher03G0027900.1 Alkaloid 7DLH medium borderline
Gher03G0027910.1 Alkaloid 7DLH medium borderline
Gher03G0027920.1 Alkaloid 7DLH medium borderline
Gher03G0027950.1 Alkaloid 7DLH medium borderline
Gher03G0027970.1 Alkaloid 7DLH medium borderline
Gher03G0027980.1 Alkaloid 7DLH medium borderline
Gher03G0027990.1 Alkaloid 7DLH medium borderline
Gher03G0028000.1 Alkaloid 7DLH medium borderline
Gher03G0028010.1 Alkaloid 7DLH medium pass
Gher03G0028510.1 Alkaloid 7DLH medium borderline
Gher04G0013090.1 Alkaloid 7DLH medium borderline
Gher04G0024920.1 Alkaloid 7DLH medium borderline
Gher04G0024930.1 Alkaloid 7DLH medium borderline
Gher05G0003600.1 Alkaloid 7DLH medium borderline
Gher05G0006890.1 Alkaloid 7DLH medium borderline
Gher05G0021140.1 Alkaloid 7DLH medium borderline
Gher05G0021150.1 Alkaloid 7DLH medium borderline
Gher07G0012400.1 Alkaloid 7DLH medium borderline
Gher07G0023300.1 Alkaloid 7DLH medium borderline
Gher08G0017690.1 Alkaloid 7DLH medium borderline
Gher08G0024200.1 Alkaloid 7DLH medium borderline
Gher08G0030180.1 Alkaloid 7DLH medium borderline
Gher09G0006920.1 Alkaloid 7DLH medium borderline
Gher09G0023020.1 Alkaloid 7DLH medium borderline
Gher10G0001440.1 Alkaloid 7DLH low borderline
Gher10G0011200.1 Alkaloid 7DLH medium borderline
Gher10G0011230.1 Alkaloid 7DLH medium borderline
Gher11G0018600.1 Alkaloid 7DLH medium borderline
Gher11G0025560.1 Alkaloid 7DLH medium borderline
Gher11G0044500.1 Alkaloid 7DLH medium borderline
Gher12G0006130.1 Alkaloid 7DLH medium borderline
Gher12G0013500.1 Alkaloid 7DLH medium borderline
Gher12G0028950.1 Alkaloid 7DLH medium borderline
Gher13G0004320.1 Alkaloid 7DLH medium borderline
Gher13G0004340.1 Alkaloid 7DLH medium borderline
Gher13G0004360.1 Alkaloid 7DLH medium borderline