PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2126
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status
Gher02G0002230.1 Alkaloid G8O/G8H medium borderline
Gher02G0009300.1 Alkaloid G8O/G8H medium borderline
Gher02G0014410.1 Alkaloid G8O/G8H medium borderline
Gher02G0019820.1 Alkaloid G8O/G8H medium borderline
Gher03G0010190.1 Alkaloid G8O/G8H low borderline
Gher04G0023910.1 Alkaloid G8O/G8H medium borderline
Gher05G0030090.1 Alkaloid G8O/G8H medium borderline
Gher05G0038190.1 Alkaloid G8O/G8H medium borderline
Gher05G0042960.1 Alkaloid G8O/G8H medium borderline
Gher05G0042990.1 Alkaloid G8O/G8H medium borderline
Gher06G0001680.1 Alkaloid G8O/G8H medium borderline
Gher06G0020560.1 Alkaloid G8O/G8H medium borderline
Gher06G0024800.1 Alkaloid G8O/G8H medium borderline
Gher07G0006690.1 Alkaloid G8O/G8H medium borderline
Gher07G0009270.1 Alkaloid G8O/G8H low borderline
Gher07G0025350.1 Alkaloid G8O/G8H medium borderline
Gher07G0025370.1 Alkaloid G8O/G8H medium borderline
Gher08G0021300.1 Alkaloid G8O/G8H medium borderline
Gher08G0022960.1 Alkaloid G8O/G8H medium pass
Gher08G0022970.1 Alkaloid G8O/G8H medium borderline
Gher08G0023270.1 Alkaloid G8O/G8H medium borderline
Gher08G0023310.1 Alkaloid G8O/G8H medium borderline
Gher09G0002040.1 Alkaloid G8O/G8H medium borderline
Gher09G0024620.1 Alkaloid G8O/G8H medium pass
Gher09G0024630.1 Alkaloid G8O/G8H medium borderline
Gher10G0023470.1 Alkaloid G8O/G8H medium borderline
Gher10G0025670.1 Alkaloid G8O/G8H medium borderline
Gher10G0025720.1 Alkaloid G8O/G8H medium borderline
Gher10G0026610.1 Alkaloid G8O/G8H medium borderline
Gher10G0030510.1 Alkaloid G8O/G8H medium borderline
Gher10G0030520.1 Alkaloid G8O/G8H low borderline
Gher11G0041310.1 Alkaloid G8O/G8H medium borderline
Gher11G0041320.1 Alkaloid G8O/G8H medium borderline
Gher11G0041330.1 Alkaloid G8O/G8H medium borderline
Gher12G0026380.1 Alkaloid G8O/G8H medium borderline
Gher12G0032680.1 Alkaloid G8O/G8H low borderline
Gher12G0032690.1 Alkaloid G8O/G8H low borderline
Gher12G0032710.1 Alkaloid G8O/G8H low borderline
Gher12G0032730.1 Alkaloid G8O/G8H medium borderline
Gher13G0002670.1 Alkaloid G8O/G8H medium borderline
Gher13G0012630.1 Alkaloid G8O/G8H medium borderline