PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2126
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status
Gher01G0018920.1 Phenylpropanoid LAC low borderline
Gher01G0028150.1 Phenylpropanoid LAC medium pass
Gher01G0028650.1 Phenylpropanoid LAC medium pass
Gher02G0003550.1 Phenylpropanoid LAC medium pass
Gher02G0005970.1 Phenylpropanoid LAC medium pass
Gher02G0005980.1 Phenylpropanoid LAC medium pass
Gher02G0006000.1 Phenylpropanoid LAC medium pass
Gher02G0006530.1 Phenylpropanoid LAC medium pass
Gher02G0008890.1 Phenylpropanoid LAC medium pass
Gher02G0008930.1 Phenylpropanoid LAC medium pass
Gher02G0017730.1 Phenylpropanoid LAC medium pass
Gher03G0023040.1 Phenylpropanoid LAC medium pass
Gher04G0016300.1 Phenylpropanoid LAC medium pass
Gher04G0016740.1 Phenylpropanoid LAC medium pass
Gher04G0016750.1 Phenylpropanoid LAC medium pass
Gher04G0016770.1 Phenylpropanoid LAC medium pass
Gher04G0016810.1 Phenylpropanoid LAC medium pass
Gher04G0016990.1 Phenylpropanoid LAC medium pass
Gher05G0009780.1 Phenylpropanoid LAC medium pass
Gher05G0010700.1 Phenylpropanoid LAC medium pass
Gher05G0010750.1 Phenylpropanoid LAC medium pass
Gher05G0020080.1 Phenylpropanoid LAC low borderline
Gher05G0026660.1 Phenylpropanoid LAC medium pass
Gher05G0026670.1 Phenylpropanoid LAC medium pass
Gher05G0026680.1 Phenylpropanoid LAC medium pass
Gher05G0026690.1 Phenylpropanoid LAC low borderline
Gher05G0026700.1 Phenylpropanoid LAC medium pass
Gher05G0026720.1 Phenylpropanoid LAC medium pass
Gher05G0026730.1 Phenylpropanoid LAC medium pass
Gher05G0026740.1 Phenylpropanoid LAC medium pass
Gher05G0026750.1 Phenylpropanoid LAC medium pass
Gher05G0026760.1 Phenylpropanoid LAC medium pass
Gher05G0026780.1 Phenylpropanoid LAC medium pass
Gher05G0026790.1 Phenylpropanoid LAC medium pass
Gher05G0029270.1 Phenylpropanoid LAC medium pass
Gher05G0031880.1 Phenylpropanoid LAC low borderline
Gher05G0031890.1 Phenylpropanoid LAC low borderline
Gher05G0033730.1 Phenylpropanoid LAC medium pass
Gher05G0033870.1 Phenylpropanoid LAC medium pass
Gher06G0014500.1 Phenylpropanoid LAC medium pass
Gher06G0022190.1 Phenylpropanoid LAC medium pass
Gher06G0022270.1 Phenylpropanoid LAC medium pass
Gher06G0022280.1 Phenylpropanoid LAC medium pass
Gher06G0022300.1 Phenylpropanoid LAC medium pass
Gher06G0024260.1 Phenylpropanoid LAC low borderline
Gher08G0025840.1 Phenylpropanoid LAC medium pass
Gher08G0026500.1 Phenylpropanoid LAC medium pass
Gher09G0020300.1 Phenylpropanoid LAC medium pass
Gher10G0017090.1 Phenylpropanoid LAC medium pass
Gher10G0017410.1 Phenylpropanoid LAC low borderline