PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2126
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.01% Alkaloid pathway 22.86% Phenylpropanoid pathway 21.21% Flavonoid pathway 12.04% Rosmarinic acid pathway 8.04% Steroid pathway 5.83%
Family Distribution
C4H 7.23% C3'H/CYP98A 6.08% BAHD 5.08% CYP76 3.93% IFS 3.81% UGT 3.77% T3O 3.64% F3H 3.55%
Other Families 62.9%
More Families (98)
7DLGT 187 3.41% UFGT 183 3.33% 4CL 177 3.22% POD 175 3.19% DWF4/CYP90B1 112 2.04% BR6OX2/CYP85A2 101 1.84% F3'H/CYP75B 100 1.82% CODM/T6ODM 99 1.8% NMT 97 1.77% STR 96 1.75% H6H 89 1.62% CAD 85 1.55% TPS 84 1.53% CAS 79 1.44% GES 78 1.42% LAC 77 1.4% CYP90D1 74 1.35% TRI/TRII 72 1.31% CYP71 72 1.31% SMT1/SMT2/SMT3 63 1.15% 7DLH 57 1.04% CSE 52 0.95% BBE 51 0.93% COMT 51 0.93% HCT 50 0.91% GS 48 0.87% RAS 42 0.76% G8O/G8H 41 0.75% PYKS 40 0.73% IO 40 0.73% NCS 38 0.69% T16H 37 0.67% FNS 36 0.66% IFR 36 0.66% 16OMT 35 0.64% F3'5'H/CYP75A 33 0.6% F5H/CYP84A 31 0.56% BR6OX1/CYP85A1 30 0.55% ANR 29 0.53% CCR 28 0.51% CPD/CYP90A1 27 0.49% GGPPS 26 0.47% COR 25 0.46% SGD 24 0.44% TAT 24 0.44% CYP51G1 24 0.44% PMT 22 0.4% ROT3/CYP90C1 22 0.4% PAL 21 0.38% SLS 20 0.36% 8HGO 20 0.36% DFR 16 0.29% SQE 14 0.25% TYDC_DDC 13 0.24% LAMT 13 0.24% CNMT 13 0.24% FPPS 13 0.24% ANS/LDOX 12 0.22% CHS 12 0.22% HMGS 12 0.22% CCoAOMT 10 0.18% MPO 9 0.16% HMGR 9 0.16% CYP80B1 8 0.15% HPPR 8 0.15% SQS/FDFT1 8 0.15% MVK 8 0.15% ISY 7 0.13% 6OMT_4OMT_SOMT 7 0.13% CPR 7 0.13% SMO1/SMO2 7 0.13% MVD 7 0.13% AACT 7 0.13% CYP719 6 0.11% DXS 6 0.11% ADC 5 0.09% XMT_MXMT_DXMT 5 0.09% DET2 5 0.09% TDC 4 0.07% CYP80F1 4 0.07% CHI 4 0.07% HDS/IspG 4 0.07% ODC 3 0.05% FLS 3 0.05% DWF5 3 0.05% DWF1 3 0.05% MDS/IspF 3 0.05% MCT/IspD 3 0.05% HDR/IspH 3 0.05% DXR 2 0.04% FK 1 0.02% CPI1 1 0.02% DWF7 1 0.02% HYD1 1 0.02% CMK/IspE 1 0.02% IDI 1 0.02% PMK 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
Gher01G0001810.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
Gher01G0001830.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
Gher07G0008480.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Gher07G0018940.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Gher10G0023670.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Gher10G0023680.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Gher10G0023700.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Gher10G0023720.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Gher13G0022760.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Gher13G0022780.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Gher13G0022830.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Gher13G0022880.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Gher13G0022930.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO