PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2126
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Gher01G0021110.1 Alkaloid IO medium borderline
Gher01G0025140.1 Alkaloid IO medium borderline
Gher02G0010860.1 Alkaloid IO medium borderline
Gher02G0017490.1 Alkaloid IO medium borderline
Gher03G0022750.1 Alkaloid IO medium borderline
Gher04G0015160.1 Alkaloid IO medium borderline
Gher04G0015170.1 Alkaloid IO medium borderline
Gher05G0004510.1 Alkaloid IO medium borderline
Gher05G0007410.1 Alkaloid IO medium borderline
Gher05G0011810.1 Alkaloid IO medium pass
Gher05G0021400.1 Alkaloid IO medium borderline
Gher05G0027960.1 Alkaloid IO low borderline
Gher06G0001670.1 Alkaloid IO medium borderline
Gher06G0001740.1 Alkaloid IO medium borderline
Gher06G0027540.1 Alkaloid IO medium borderline
Gher07G0025400.1 Alkaloid IO medium borderline
Gher07G0025460.1 Alkaloid IO medium borderline
Gher07G0025470.1 Alkaloid IO low borderline
Gher08G0014560.1 Alkaloid IO medium borderline
Gher08G0018770.1 Alkaloid IO medium borderline
Gher09G0002010.1 Alkaloid IO medium borderline
Gher09G0003890.1 Alkaloid IO low borderline
Gher09G0003900.1 Alkaloid IO low borderline
Gher09G0016960.1 Alkaloid IO medium pass
Gher09G0018230.1 Alkaloid IO medium borderline
Gher09G0018960.1 Alkaloid IO low borderline
Gher09G0025240.1 Alkaloid IO medium borderline
Gher10G0023190.1 Alkaloid IO medium borderline
Gher10G0029220.1 Alkaloid IO medium borderline
Gher11G0016140.1 Alkaloid IO medium borderline
Gher11G0021020.1 Alkaloid IO low borderline
Gher11G0044380.1 Alkaloid IO medium borderline
Gher11G0044390.1 Alkaloid IO medium pass
Gher11G0044420.1 Alkaloid IO medium borderline
Gher12G0004760.1 Alkaloid IO low borderline
Gher12G0004790.1 Alkaloid IO low borderline
Gher12G0032700.1 Alkaloid IO medium borderline
Gher12G0032750.1 Alkaloid IO medium borderline
Gher13G0016560.1 Alkaloid IO medium borderline
Gher13G0016930.1 Alkaloid IO medium borderline