PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2126
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
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Gene Pathway Family Confidence Status
Gher09G0007190.1 Alkaloid CODM/T6ODM medium borderline
Gher09G0009430.1 Alkaloid CODM/T6ODM medium borderline
Gher09G0009440.1 Alkaloid CODM/T6ODM medium borderline
Gher09G0013160.1 Alkaloid CODM/T6ODM medium borderline
Gher09G0015090.1 Alkaloid CODM/T6ODM medium borderline
Gher09G0022750.1 Alkaloid CODM/T6ODM medium borderline
Gher09G0028570.1 Alkaloid CODM/T6ODM medium borderline
Gher09G0028580.1 Alkaloid CODM/T6ODM medium borderline
Gher09G0028590.1 Alkaloid CODM/T6ODM medium borderline
Gher09G0028600.1 Alkaloid CODM/T6ODM medium borderline
Gher09G0028610.1 Alkaloid CODM/T6ODM medium borderline
Gher09G0028620.1 Alkaloid CODM/T6ODM medium borderline
Gher09G0030300.1 Alkaloid CODM/T6ODM medium borderline
Gher10G0001650.1 Alkaloid CODM/T6ODM medium borderline
Gher10G0003440.1 Alkaloid CODM/T6ODM medium borderline
Gher10G0003450.1 Alkaloid CODM/T6ODM medium borderline
Gher10G0004380.1 Alkaloid CODM/T6ODM medium borderline
Gher10G0007560.1 Alkaloid CODM/T6ODM medium borderline
Gher10G0010130.1 Alkaloid CODM/T6ODM medium borderline
Gher10G0032380.1 Alkaloid CODM/T6ODM medium borderline
Gher11G0009580.1 Alkaloid CODM/T6ODM medium borderline
Gher11G0014830.1 Alkaloid CODM/T6ODM medium borderline
Gher11G0017450.1 Alkaloid CODM/T6ODM medium borderline
Gher11G0030360.1 Alkaloid CODM/T6ODM medium borderline
Gher11G0030520.1 Alkaloid CODM/T6ODM medium borderline
Gher11G0039300.1 Alkaloid CODM/T6ODM medium borderline
Gher12G0007650.1 Alkaloid CODM/T6ODM medium borderline
Gher12G0016530.1 Alkaloid CODM/T6ODM medium borderline
Gher12G0027050.1 Alkaloid CODM/T6ODM medium borderline
Gher12G0028350.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0003000.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0005960.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0006220.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0006230.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0006240.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0011520.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0020730.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0020850.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0020860.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0020980.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0020990.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0021250.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0021260.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0021270.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0021280.1 Alkaloid CODM/T6ODM medium borderline
GherContig10270000750.1 Alkaloid CODM/T6ODM medium borderline
GherContig9580017710.1 Alkaloid CODM/T6ODM medium borderline
GherContig9700018070.1 Alkaloid CODM/T6ODM low borderline
GherContig9700018090.1 Alkaloid CODM/T6ODM medium borderline