PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2554
Candidate Protein Records
2126
Pathway-Level Records
5491
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 30.01% Alkaloid pathway 22.86% Phenylpropanoid pathway 21.21% Flavonoid pathway 12.04% Rosmarinic acid pathway 8.04% Steroid pathway 5.83%
Family Distribution
C4H 7.23% C3'H/CYP98A 6.08% BAHD 5.08% CYP76 3.93% IFS 3.81% UGT 3.77% T3O 3.64% F3H 3.55%
Other Families 62.9%
More Families (98)
7DLGT 187 3.41% UFGT 183 3.33% 4CL 177 3.22% POD 175 3.19% DWF4/CYP90B1 112 2.04% BR6OX2/CYP85A2 101 1.84% F3'H/CYP75B 100 1.82% CODM/T6ODM 99 1.8% NMT 97 1.77% STR 96 1.75% H6H 89 1.62% CAD 85 1.55% TPS 84 1.53% CAS 79 1.44% GES 78 1.42% LAC 77 1.4% CYP90D1 74 1.35% TRI/TRII 72 1.31% CYP71 72 1.31% SMT1/SMT2/SMT3 63 1.15% 7DLH 57 1.04% CSE 52 0.95% BBE 51 0.93% COMT 51 0.93% HCT 50 0.91% GS 48 0.87% RAS 42 0.76% G8O/G8H 41 0.75% PYKS 40 0.73% IO 40 0.73% NCS 38 0.69% T16H 37 0.67% FNS 36 0.66% IFR 36 0.66% 16OMT 35 0.64% F3'5'H/CYP75A 33 0.6% F5H/CYP84A 31 0.56% BR6OX1/CYP85A1 30 0.55% ANR 29 0.53% CCR 28 0.51% CPD/CYP90A1 27 0.49% GGPPS 26 0.47% COR 25 0.46% SGD 24 0.44% TAT 24 0.44% CYP51G1 24 0.44% PMT 22 0.4% ROT3/CYP90C1 22 0.4% PAL 21 0.38% SLS 20 0.36% 8HGO 20 0.36% DFR 16 0.29% SQE 14 0.25% TYDC_DDC 13 0.24% LAMT 13 0.24% CNMT 13 0.24% FPPS 13 0.24% ANS/LDOX 12 0.22% CHS 12 0.22% HMGS 12 0.22% CCoAOMT 10 0.18% MPO 9 0.16% HMGR 9 0.16% CYP80B1 8 0.15% HPPR 8 0.15% SQS/FDFT1 8 0.15% MVK 8 0.15% ISY 7 0.13% 6OMT_4OMT_SOMT 7 0.13% CPR 7 0.13% SMO1/SMO2 7 0.13% MVD 7 0.13% AACT 7 0.13% CYP719 6 0.11% DXS 6 0.11% ADC 5 0.09% XMT_MXMT_DXMT 5 0.09% DET2 5 0.09% TDC 4 0.07% CYP80F1 4 0.07% CHI 4 0.07% HDS/IspG 4 0.07% ODC 3 0.05% FLS 3 0.05% DWF5 3 0.05% DWF1 3 0.05% MDS/IspF 3 0.05% MCT/IspD 3 0.05% HDR/IspH 3 0.05% DXR 2 0.04% FK 1 0.02% CPI1 1 0.02% DWF7 1 0.02% HYD1 1 0.02% CMK/IspE 1 0.02% IDI 1 0.02% PMK 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Gher12G0032750.1 Terpenoid CYP76 medium borderline CYP76__00003__sp_A0A0S1TPC7_C76K6_SALPM
Gher13G0000120.1 Terpenoid CYP76 medium borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Gher13G0002670.1 Terpenoid CYP76 medium pass CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Gher13G0002690.1 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Gher13G0002720.1 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Gher13G0003390.1 Terpenoid CYP76 medium borderline CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
Gher13G0007560.1 Terpenoid CYP76 low borderline CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Gher13G0007590.1 Terpenoid CYP76 low borderline CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Gher13G0010380.1 Terpenoid CYP76 medium borderline CYP76__00004__sp_A0A0Y0GRS3_C76H3_SALMI
Gher13G0012630.1 Terpenoid CYP76 medium pass CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Gher13G0016560.1 Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
Gher13G0016570.1 Terpenoid CYP76 medium pass CYP76__00014__sp_I3PFJ5_C76AD_BETVU
Gher13G0016930.1 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
Gher13G0026950.1 Terpenoid CYP76 medium borderline CYP76__00008__sp_A0A1D8QMG4_C76K8_ROSOF
GherContig8880014920.1 Terpenoid CYP76 medium borderline CYP76__00003__sp_A0A0S1TPC7_C76K6_SALPM
GherContig9870018650.1 Terpenoid CYP76 low borderline CYP76__00023__sp_S4UX02_CYPH1_SALMI