Gossypium herbaceum (gossypium_herbaceum)
Imported from atlas release summary for Gossypium herbaceum.
2126
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2126
Candidate Genes
C4H
7.23%
C3'H/CYP98A
6.08%
BAHD
5.08%
CYP76
3.93%
IFS
3.81%
UGT
3.77%
T3O
3.64%
F3H
3.55%
Other Families
62.9%
More Families (98)
7DLGT
187
3.41%
UFGT
183
3.33%
4CL
177
3.22%
POD
175
3.19%
DWF4/CYP90B1
112
2.04%
BR6OX2/CYP85A2
101
1.84%
F3'H/CYP75B
100
1.82%
CODM/T6ODM
99
1.8%
NMT
97
1.77%
STR
96
1.75%
H6H
89
1.62%
CAD
85
1.55%
TPS
84
1.53%
CAS
79
1.44%
GES
78
1.42%
LAC
77
1.4%
CYP90D1
74
1.35%
TRI/TRII
72
1.31%
CYP71
72
1.31%
SMT1/SMT2/SMT3
63
1.15%
7DLH
57
1.04%
CSE
52
0.95%
BBE
51
0.93%
COMT
51
0.93%
HCT
50
0.91%
GS
48
0.87%
RAS
42
0.76%
G8O/G8H
41
0.75%
PYKS
40
0.73%
IO
40
0.73%
NCS
38
0.69%
T16H
37
0.67%
FNS
36
0.66%
IFR
36
0.66%
16OMT
35
0.64%
F3'5'H/CYP75A
33
0.6%
F5H/CYP84A
31
0.56%
BR6OX1/CYP85A1
30
0.55%
ANR
29
0.53%
CCR
28
0.51%
CPD/CYP90A1
27
0.49%
GGPPS
26
0.47%
COR
25
0.46%
SGD
24
0.44%
TAT
24
0.44%
CYP51G1
24
0.44%
PMT
22
0.4%
ROT3/CYP90C1
22
0.4%
PAL
21
0.38%
SLS
20
0.36%
8HGO
20
0.36%
DFR
16
0.29%
SQE
14
0.25%
TYDC_DDC
13
0.24%
LAMT
13
0.24%
CNMT
13
0.24%
FPPS
13
0.24%
ANS/LDOX
12
0.22%
CHS
12
0.22%
HMGS
12
0.22%
CCoAOMT
10
0.18%
MPO
9
0.16%
HMGR
9
0.16%
CYP80B1
8
0.15%
HPPR
8
0.15%
SQS/FDFT1
8
0.15%
MVK
8
0.15%
ISY
7
0.13%
6OMT_4OMT_SOMT
7
0.13%
CPR
7
0.13%
SMO1/SMO2
7
0.13%
MVD
7
0.13%
AACT
7
0.13%
CYP719
6
0.11%
DXS
6
0.11%
ADC
5
0.09%
XMT_MXMT_DXMT
5
0.09%
DET2
5
0.09%
TDC
4
0.07%
CYP80F1
4
0.07%
CHI
4
0.07%
HDS/IspG
4
0.07%
ODC
3
0.05%
FLS
3
0.05%
DWF5
3
0.05%
DWF1
3
0.05%
MDS/IspF
3
0.05%
MCT/IspD
3
0.05%
HDR/IspH
3
0.05%
DXR
2
0.04%
FK
1
0.02%
CPI1
1
0.02%
DWF7
1
0.02%
HYD1
1
0.02%
CMK/IspE
1
0.02%
IDI
1
0.02%
PMK
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 638 | 22 | BAHD (210) | View species results |
| Alkaloid pathway | 486 | 25 | 7DLGT (85) | View species results |
| Phenylpropanoid pathway | 451 | 12 | POD (164) | View species results |
| Flavonoid pathway | 256 | 12 | UFGT (166) | View species results |
| Rosmarinic acid pathway | 171 | 7 | C4H (73) | View species results |
| Steroid pathway | 124 | 11 | CAS (63) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2195 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 371 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Gher07G0015830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher08G0003290.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher08G0011330.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher08G0015630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher08G0020370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher09G0000240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher09G0011900.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Gher09G0011920.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Gher09G0014460.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Gher09G0015160.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher09G0015310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher09G0015780.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher09G0017710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher09G0018380.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher09G0026010.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Gher09G0026050.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Gher09G0026590.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Gher10G0006780.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher10G0006850.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher10G0007600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher10G0022990.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher10G0027370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher11G0011900.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher11G0011910.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher11G0024570.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher11G0026780.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher11G0026830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher11G0026850.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher11G0027340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher11G0039950.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Gher11G0039960.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Gher11G0039970.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Gher11G0039980.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Gher11G0039990.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Gher11G0040590.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Gher11G0044830.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher12G0020820.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Gher12G0022350.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher12G0026110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher12G0033350.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher13G0002530.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher13G0024540.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gher13G0026020.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Gher13G0027980.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GherContig10040000130.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GherContig209E10011180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |