PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2554
Candidate Protein Records
2126
Pathway-Level Records
5491
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
Gher11G0016950.1 Alkaloid T3O medium pass
Gher11G0020600.1 Alkaloid T3O medium borderline
Gher11G0021570.1 Alkaloid T3O medium borderline
Gher11G0021590.1 Alkaloid T3O medium borderline
Gher11G0021610.1 Alkaloid T3O medium borderline
Gher11G0022960.1 Alkaloid T3O medium borderline
Gher11G0025830.1 Alkaloid T3O low borderline
Gher12G0002690.1 Alkaloid T3O low borderline
Gher12G0002700.1 Alkaloid T3O low borderline
Gher12G0004830.1 Alkaloid T3O medium borderline
Gher12G0006470.1 Alkaloid T3O medium borderline
Gher12G0007270.1 Alkaloid T3O medium pass
Gher12G0011630.1 Alkaloid T3O medium borderline
Gher12G0015300.1 Alkaloid T3O medium borderline
Gher12G0015470.1 Alkaloid T3O medium borderline
Gher12G0021100.1 Alkaloid T3O medium borderline
Gher12G0021520.1 Alkaloid T3O low borderline
Gher12G0023640.1 Alkaloid T3O medium borderline
Gher12G0024030.1 Alkaloid T3O medium borderline
Gher12G0024040.1 Alkaloid T3O medium borderline
Gher12G0026050.1 Alkaloid T3O medium pass
Gher12G0028020.1 Alkaloid T3O medium borderline
Gher12G0028550.1 Alkaloid T3O medium pass
Gher12G0030050.1 Alkaloid T3O medium borderline
Gher12G0032200.1 Alkaloid T3O medium pass
Gher13G0000120.1 Alkaloid T3O medium borderline
Gher13G0001450.1 Alkaloid T3O medium pass
Gher13G0002000.1 Alkaloid T3O medium pass
Gher13G0002690.1 Alkaloid T3O medium borderline
Gher13G0002720.1 Alkaloid T3O medium borderline
Gher13G0003390.1 Alkaloid T3O medium borderline
Gher13G0004610.1 Alkaloid T3O medium pass
Gher13G0007400.1 Alkaloid T3O medium pass
Gher13G0009600.1 Alkaloid T3O medium pass
Gher13G0010380.1 Alkaloid T3O medium borderline
Gher13G0010420.1 Alkaloid T3O medium pass
Gher13G0016100.1 Alkaloid T3O medium pass
Gher13G0016340.1 Alkaloid T3O medium pass
Gher13G0017000.1 Alkaloid T3O medium borderline
Gher13G0018150.1 Alkaloid T3O medium borderline
Gher13G0018300.1 Alkaloid T3O medium borderline
Gher13G0021130.1 Alkaloid T3O medium pass
Gher13G0021190.1 Alkaloid T3O medium borderline
Gher13G0021200.1 Alkaloid T3O medium borderline
Gher13G0021210.1 Alkaloid T3O medium borderline
Gher13G0026930.1 Alkaloid T3O medium borderline
Gher13G0026950.1 Alkaloid T3O medium borderline
GherContig10040000150.1 Alkaloid T3O medium pass
GherContig8880014920.1 Alkaloid T3O medium borderline
GherContig9120016030.1 Alkaloid T3O medium pass