PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2554
Candidate Protein Records
2126
Pathway-Level Records
5491
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Gher11G0039300.1 Alkaloid CODM/T6ODM medium borderline
Gher12G0007650.1 Alkaloid CODM/T6ODM medium borderline
Gher12G0016530.1 Alkaloid CODM/T6ODM medium borderline
Gher12G0027050.1 Alkaloid CODM/T6ODM medium borderline
Gher12G0028350.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0003000.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0005960.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0006220.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0006230.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0006240.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0011520.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0020730.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0020850.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0020860.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0020980.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0020990.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0021250.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0021260.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0021270.1 Alkaloid CODM/T6ODM medium borderline
Gher13G0021280.1 Alkaloid CODM/T6ODM medium borderline
GherContig10270000750.1 Alkaloid CODM/T6ODM medium borderline
GherContig9580017710.1 Alkaloid CODM/T6ODM medium borderline
GherContig9700018070.1 Alkaloid CODM/T6ODM low borderline
GherContig9700018090.1 Alkaloid CODM/T6ODM medium borderline
Gher01G0018090.1 Alkaloid COR medium pass
Gher01G0018110.1 Alkaloid COR medium pass
Gher02G0007990.1 Alkaloid COR medium pass
Gher03G0008820.1 Alkaloid COR medium pass
Gher03G0008830.1 Alkaloid COR medium pass
Gher03G0008840.1 Alkaloid COR medium pass
Gher03G0008860.1 Alkaloid COR medium pass
Gher03G0013000.1 Alkaloid COR medium pass
Gher03G0013420.1 Alkaloid COR medium pass
Gher03G0026690.1 Alkaloid COR medium pass
Gher03G0026710.1 Alkaloid COR medium pass
Gher04G0016530.1 Alkaloid COR medium pass
Gher04G0016540.1 Alkaloid COR medium pass
Gher04G0016560.1 Alkaloid COR medium pass
Gher04G0016570.1 Alkaloid COR medium pass
Gher04G0021630.1 Alkaloid COR medium pass
Gher04G0023640.1 Alkaloid COR medium pass
Gher09G0020190.1 Alkaloid COR low borderline
Gher11G0045050.1 Alkaloid COR medium pass
Gher12G0020570.1 Alkaloid COR low borderline
Gher13G0000810.1 Alkaloid COR medium pass
Gher13G0000830.1 Alkaloid COR medium pass
Gher13G0000840.1 Alkaloid COR low borderline
Gher13G0021910.1 Alkaloid COR medium pass
GherContig11280003730.1 Alkaloid COR medium pass
Gher03G0017690.1 Alkaloid CYP719 medium borderline