PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2554
Candidate Protein Records
2126
Pathway-Level Records
5491
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GherContig9880018690.1 Terpenoid HMGS medium pass
Gher08G0029350.1 Terpenoid IDI medium pass
Gher03G0000030.1 Terpenoid MCT/IspD low borderline
Gher06G0015010.1 Terpenoid MCT/IspD high pass
Gher12G0005450.1 Terpenoid MCT/IspD low borderline
Gher02G0012030.1 Terpenoid MDS/IspF high pass
Gher02G0018240.1 Terpenoid MDS/IspF low borderline
Gher08G0015590.1 Terpenoid MDS/IspF high pass
Gher05G0018980.1 Terpenoid MVD low borderline
Gher06G0021560.1 Terpenoid MVD low borderline
Gher12G0020660.1 Terpenoid MVD low borderline
Gher13G0001180.1 Terpenoid MVD low borderline
Gher13G0001280.1 Terpenoid MVD medium pass
Gher13G0001300.1 Terpenoid MVD medium pass
GherContig13220009350.1 Terpenoid MVD medium borderline
Gher01G0003250.1 Terpenoid MVK low borderline
Gher03G0005540.1 Terpenoid MVK low borderline
Gher09G0014990.1 Terpenoid MVK low borderline
Gher09G0030230.1 Terpenoid MVK low borderline
Gher11G0033050.1 Terpenoid MVK medium pass
Gher11G0033060.1 Terpenoid MVK low borderline
Gher11G0040160.1 Terpenoid MVK medium pass
GherContig13220009340.1 Terpenoid MVK low borderline
Gher12G0026460.1 Terpenoid PMK medium pass
Gher01G0007760.1 Terpenoid TPS medium pass
Gher01G0007770.1 Terpenoid TPS medium pass
Gher01G0007780.1 Terpenoid TPS medium pass
Gher01G0010380.1 Terpenoid TPS medium pass
Gher01G0010390.1 Terpenoid TPS medium pass
Gher01G0010410.1 Terpenoid TPS medium pass
Gher01G0010420.1 Terpenoid TPS medium pass
Gher01G0010860.1 Terpenoid TPS medium pass
Gher01G0025740.1 Terpenoid TPS medium pass
Gher01G0025750.1 Terpenoid TPS medium pass
Gher01G0025760.1 Terpenoid TPS medium pass
Gher04G0019400.1 Terpenoid TPS medium pass
Gher04G0019410.1 Terpenoid TPS medium pass
Gher05G0008800.1 Terpenoid TPS medium pass
Gher05G0017630.1 Terpenoid TPS medium pass
Gher05G0017640.1 Terpenoid TPS medium pass
Gher05G0031650.1 Terpenoid TPS medium pass
Gher05G0034610.1 Terpenoid TPS medium pass
Gher05G0038540.1 Terpenoid TPS medium pass
Gher05G0038560.1 Terpenoid TPS medium pass
Gher05G0041440.1 Terpenoid TPS medium pass
Gher05G0042290.1 Terpenoid TPS medium pass
Gher05G0042300.1 Terpenoid TPS medium pass
Gher05G0042320.1 Terpenoid TPS medium pass
Gher05G0042330.1 Terpenoid TPS medium pass
Gher05G0042350.1 Terpenoid TPS medium pass