PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2554
Candidate Protein Records
2126
Pathway-Level Records
5491
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Gher10G0023190.1 Alkaloid IO medium borderline
Gher10G0029220.1 Alkaloid IO medium borderline
Gher11G0016140.1 Alkaloid IO medium borderline
Gher11G0021020.1 Alkaloid IO low borderline
Gher11G0044380.1 Alkaloid IO medium borderline
Gher11G0044390.1 Alkaloid IO medium pass
Gher11G0044420.1 Alkaloid IO medium borderline
Gher12G0004760.1 Alkaloid IO low borderline
Gher12G0004790.1 Alkaloid IO low borderline
Gher12G0032700.1 Alkaloid IO medium borderline
Gher12G0032750.1 Alkaloid IO medium borderline
Gher13G0016560.1 Alkaloid IO medium borderline
Gher13G0016930.1 Alkaloid IO medium borderline
Gher03G0003960.1 Alkaloid ISY medium pass
Gher05G0022550.1 Alkaloid ISY high pass
Gher05G0022560.1 Alkaloid ISY high pass
Gher09G0010230.1 Alkaloid ISY medium pass
Gher09G0010240.1 Alkaloid ISY medium pass
Gher12G0023520.1 Alkaloid ISY medium pass
Gher13G0026960.1 Alkaloid ISY medium pass
Gher01G0008970.1 Alkaloid LAMT medium borderline
Gher05G0020720.1 Alkaloid LAMT medium borderline
Gher07G0008860.1 Alkaloid LAMT medium borderline
Gher10G0023240.1 Alkaloid LAMT medium borderline
Gher10G0023300.1 Alkaloid LAMT medium borderline
Gher10G0023320.1 Alkaloid LAMT medium borderline
Gher10G0023350.1 Alkaloid LAMT medium borderline
Gher11G0019950.1 Alkaloid LAMT medium borderline
Gher12G0007290.1 Alkaloid LAMT medium borderline
Gher12G0007310.1 Alkaloid LAMT medium borderline
Gher13G0003060.1 Alkaloid LAMT medium borderline
Gher13G0003070.1 Alkaloid LAMT medium borderline
Gher13G0029770.1 Alkaloid LAMT medium borderline
Gher01G0020630.1 Alkaloid MPO high pass
Gher02G0002190.1 Alkaloid MPO medium pass
Gher02G0002200.1 Alkaloid MPO low borderline
Gher02G0002210.1 Alkaloid MPO low borderline
Gher02G0007620.1 Alkaloid MPO medium pass
Gher03G0026920.1 Alkaloid MPO medium pass
Gher08G0023000.1 Alkaloid MPO medium pass
Gher09G0027440.1 Alkaloid MPO medium pass
Gher12G0019310.1 Alkaloid MPO high pass
Gher01G0006870.1 Alkaloid NCS medium pass
Gher01G0006880.1 Alkaloid NCS medium pass
Gher02G0012810.1 Alkaloid NCS medium borderline
Gher02G0016650.1 Alkaloid NCS medium pass
Gher03G0021730.1 Alkaloid NCS medium borderline
Gher03G0021760.1 Alkaloid NCS medium borderline
Gher03G0025400.1 Alkaloid NCS medium borderline
Gher03G0025410.1 Alkaloid NCS medium borderline