PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2126
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Gher11G0002760.1 Flavonoid 4CL low borderline
Gher11G0004390.1 Flavonoid 4CL medium pass
Gher11G0019570.1 Flavonoid 4CL medium pass
Gher11G0040120.1 Flavonoid 4CL low borderline
Gher12G0019700.1 Flavonoid 4CL medium pass
Gher12G0029640.1 Flavonoid 4CL low borderline
Gher13G0012910.1 Flavonoid 4CL low borderline
Gher13G0027850.1 Flavonoid 4CL medium pass
GherContig10440001620.1 Flavonoid 4CL low borderline
Gher01G0007840.1 Flavonoid ANR medium borderline
Gher01G0025450.1 Flavonoid ANR medium borderline
Gher02G0016560.1 Flavonoid ANR medium borderline
Gher02G0017860.1 Flavonoid ANR medium borderline
Gher04G0007120.1 Flavonoid ANR low borderline
Gher05G0004690.1 Flavonoid ANR medium borderline
Gher05G0007610.1 Flavonoid ANR medium borderline
Gher05G0018140.1 Flavonoid ANR medium borderline
Gher05G0021850.1 Flavonoid ANR medium borderline
Gher05G0025070.1 Flavonoid ANR low borderline
Gher05G0029750.1 Flavonoid ANR low borderline
Gher05G0029780.1 Flavonoid ANR medium borderline
Gher05G0038320.1 Flavonoid ANR low borderline
Gher06G0010110.1 Flavonoid ANR low borderline
Gher06G0023590.1 Flavonoid ANR low borderline
Gher06G0023810.1 Flavonoid ANR low borderline
Gher07G0014830.1 Flavonoid ANR medium borderline
Gher07G0014840.1 Flavonoid ANR medium borderline
Gher07G0016840.1 Flavonoid ANR medium borderline
Gher07G0017930.1 Flavonoid ANR medium borderline
Gher07G0017940.1 Flavonoid ANR medium borderline
Gher07G0017950.1 Flavonoid ANR high pass
Gher07G0017960.1 Flavonoid ANR medium borderline
Gher11G0008490.1 Flavonoid ANR medium borderline
Gher11G0008500.1 Flavonoid ANR medium borderline
Gher11G0009330.1 Flavonoid ANR medium borderline
Gher11G0011050.1 Flavonoid ANR low borderline
Gher12G0005770.1 Flavonoid ANR medium borderline
GherContig11140003360.1 Flavonoid ANR low borderline
Gher01G0003850.1 Flavonoid ANS/LDOX medium borderline
Gher01G0004100.1 Flavonoid ANS/LDOX medium borderline
Gher01G0008040.1 Flavonoid ANS/LDOX medium borderline
Gher03G0025400.1 Flavonoid ANS/LDOX low borderline
Gher03G0026070.1 Flavonoid ANS/LDOX low borderline
Gher06G0019080.1 Flavonoid ANS/LDOX medium borderline
Gher07G0010180.1 Flavonoid ANS/LDOX medium borderline
Gher07G0015660.1 Flavonoid ANS/LDOX medium borderline
Gher09G0011820.1 Flavonoid ANS/LDOX medium borderline
Gher09G0028570.1 Flavonoid ANS/LDOX medium borderline
Gher10G0004380.1 Flavonoid ANS/LDOX medium borderline
Gher13G0020860.1 Flavonoid ANS/LDOX medium borderline