PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2554
Candidate Protein Records
2126
Pathway-Level Records
5491
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Gher02G0021590.1 Alkaloid T3O medium pass
Gher03G0003410.1 Alkaloid T3O medium pass
Gher03G0007600.1 Alkaloid T3O low borderline
Gher03G0010180.1 Alkaloid T3O medium borderline
Gher03G0010220.1 Alkaloid T3O low borderline
Gher03G0014100.1 Alkaloid T3O medium borderline
Gher03G0020320.1 Alkaloid T3O medium borderline
Gher03G0020350.1 Alkaloid T3O medium borderline
Gher03G0030730.1 Alkaloid T3O medium borderline
Gher04G0001450.1 Alkaloid T3O medium pass
Gher04G0002360.1 Alkaloid T3O low borderline
Gher04G0002420.1 Alkaloid T3O medium pass
Gher04G0004850.1 Alkaloid T3O medium pass
Gher04G0007520.1 Alkaloid T3O medium pass
Gher04G0009980.1 Alkaloid T3O low borderline
Gher04G0019510.1 Alkaloid T3O medium pass
Gher04G0022660.1 Alkaloid T3O medium borderline
Gher04G0022670.1 Alkaloid T3O medium borderline
Gher05G0009020.1 Alkaloid T3O low borderline
Gher05G0009680.1 Alkaloid T3O low borderline
Gher05G0012420.1 Alkaloid T3O medium pass
Gher05G0016110.1 Alkaloid T3O medium pass
Gher05G0016130.1 Alkaloid T3O medium pass
Gher05G0021420.1 Alkaloid T3O medium borderline
Gher05G0021430.1 Alkaloid T3O medium borderline
Gher05G0021450.1 Alkaloid T3O medium borderline
Gher05G0021460.1 Alkaloid T3O medium borderline
Gher05G0021470.1 Alkaloid T3O medium borderline
Gher05G0021940.1 Alkaloid T3O medium pass
Gher05G0022440.1 Alkaloid T3O medium borderline
Gher05G0022450.1 Alkaloid T3O medium borderline
Gher05G0022500.1 Alkaloid T3O medium borderline
Gher05G0027980.1 Alkaloid T3O medium borderline
Gher05G0028170.1 Alkaloid T3O medium borderline
Gher05G0031980.1 Alkaloid T3O medium borderline
Gher05G0031990.1 Alkaloid T3O medium borderline
Gher05G0034680.1 Alkaloid T3O medium borderline
Gher05G0038140.1 Alkaloid T3O medium borderline
Gher05G0038160.1 Alkaloid T3O medium borderline
Gher05G0038180.1 Alkaloid T3O medium borderline
Gher05G0038200.1 Alkaloid T3O medium borderline
Gher06G0000990.1 Alkaloid T3O medium pass
Gher06G0001610.1 Alkaloid T3O medium borderline
Gher06G0001620.1 Alkaloid T3O medium borderline
Gher06G0001690.1 Alkaloid T3O medium borderline
Gher06G0001720.1 Alkaloid T3O medium borderline
Gher06G0001750.1 Alkaloid T3O medium borderline
Gher06G0001760.1 Alkaloid T3O medium borderline
Gher06G0002730.1 Alkaloid T3O medium borderline
Gher06G0009520.1 Alkaloid T3O medium borderline