PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2554
Candidate Protein Records
2126
Pathway-Level Records
5491
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Gher13G0004610.1 Alkaloid T3O medium pass
Gher13G0007400.1 Alkaloid T3O medium pass
Gher13G0009600.1 Alkaloid T3O medium pass
Gher13G0010380.1 Alkaloid T3O medium borderline
Gher13G0010420.1 Alkaloid T3O medium pass
Gher13G0016100.1 Alkaloid T3O medium pass
Gher13G0016340.1 Alkaloid T3O medium pass
Gher13G0017000.1 Alkaloid T3O medium borderline
Gher13G0018150.1 Alkaloid T3O medium borderline
Gher13G0018300.1 Alkaloid T3O medium borderline
Gher13G0021130.1 Alkaloid T3O medium pass
Gher13G0021190.1 Alkaloid T3O medium borderline
Gher13G0021200.1 Alkaloid T3O medium borderline
Gher13G0021210.1 Alkaloid T3O medium borderline
Gher13G0026930.1 Alkaloid T3O medium borderline
Gher13G0026950.1 Alkaloid T3O medium borderline
GherContig10040000150.1 Alkaloid T3O medium pass
GherContig8880014920.1 Alkaloid T3O medium borderline
GherContig9120016030.1 Alkaloid T3O medium pass
Gher01G0001800.1 Alkaloid TDC medium borderline
Gher01G0025420.1 Alkaloid TDC low borderline
Gher05G0000910.1 Alkaloid TDC low borderline
Gher05G0026190.1 Alkaloid TDC low borderline
Gher01G0000720.1 Alkaloid TRI/TRII low borderline
Gher01G0000730.1 Alkaloid TRI/TRII low borderline
Gher01G0018240.1 Alkaloid TRI/TRII medium pass
Gher01G0025990.1 Alkaloid TRI/TRII medium pass
Gher01G0026000.1 Alkaloid TRI/TRII medium pass
Gher01G0026010.1 Alkaloid TRI/TRII medium pass
Gher01G0026040.1 Alkaloid TRI/TRII medium pass
Gher01G0026060.1 Alkaloid TRI/TRII medium pass
Gher01G0026070.1 Alkaloid TRI/TRII medium pass
Gher01G0026080.1 Alkaloid TRI/TRII medium pass
Gher01G0026090.1 Alkaloid TRI/TRII medium pass
Gher01G0026100.1 Alkaloid TRI/TRII medium pass
Gher01G0026110.1 Alkaloid TRI/TRII medium pass
Gher01G0029170.1 Alkaloid TRI/TRII medium pass
Gher01G0029180.1 Alkaloid TRI/TRII medium pass
Gher03G0001700.1 Alkaloid TRI/TRII low borderline
Gher04G0008260.1 Alkaloid TRI/TRII medium pass
Gher04G0016020.1 Alkaloid TRI/TRII low borderline
Gher05G0010020.1 Alkaloid TRI/TRII medium pass
Gher05G0010030.1 Alkaloid TRI/TRII medium pass
Gher05G0011790.1 Alkaloid TRI/TRII medium pass
Gher05G0018810.1 Alkaloid TRI/TRII medium pass
Gher05G0034920.1 Alkaloid TRI/TRII medium pass
Gher05G0037570.1 Alkaloid TRI/TRII low borderline
Gher07G0007780.1 Alkaloid TRI/TRII medium pass
Gher07G0015770.1 Alkaloid TRI/TRII medium pass
Gher07G0017540.1 Alkaloid TRI/TRII low borderline