PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2554
Candidate Protein Records
2126
Pathway-Level Records
5491
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Gher10G0023680.1 Alkaloid TYDC_DDC medium borderline
Gher10G0023700.1 Alkaloid TYDC_DDC medium borderline
Gher10G0023720.1 Alkaloid TYDC_DDC medium borderline
Gher13G0022760.1 Alkaloid TYDC_DDC medium borderline
Gher13G0022780.1 Alkaloid TYDC_DDC medium borderline
Gher13G0022830.1 Alkaloid TYDC_DDC medium borderline
Gher13G0022880.1 Alkaloid TYDC_DDC medium borderline
Gher13G0022930.1 Alkaloid TYDC_DDC medium borderline
Gher03G0002670.1 Alkaloid XMT_MXMT_DXMT medium borderline
Gher09G0004050.1 Alkaloid XMT_MXMT_DXMT medium borderline
Gher09G0004060.1 Alkaloid XMT_MXMT_DXMT medium borderline
Gher10G0023400.1 Alkaloid XMT_MXMT_DXMT low borderline
Gher13G0029780.1 Alkaloid XMT_MXMT_DXMT medium borderline
Gher01G0002550.1 Flavonoid 4CL low borderline
Gher01G0002560.1 Flavonoid 4CL low borderline
Gher01G0011710.1 Flavonoid 4CL medium pass
Gher01G0020020.1 Flavonoid 4CL medium pass
Gher01G0023380.1 Flavonoid 4CL low borderline
Gher02G0000170.1 Flavonoid 4CL medium pass
Gher02G0004050.1 Flavonoid 4CL medium pass
Gher02G0004060.1 Flavonoid 4CL medium pass
Gher02G0011340.1 Flavonoid 4CL low borderline
Gher02G0012690.1 Flavonoid 4CL medium pass
Gher02G0012890.1 Flavonoid 4CL medium pass
Gher02G0012900.1 Flavonoid 4CL medium pass
Gher02G0016890.1 Flavonoid 4CL medium pass
Gher02G0022440.1 Flavonoid 4CL medium pass
Gher02G0022480.1 Flavonoid 4CL medium pass
Gher03G0011310.1 Flavonoid 4CL medium pass
Gher03G0019220.1 Flavonoid 4CL medium pass
Gher03G0019310.1 Flavonoid 4CL medium pass
Gher03G0024340.1 Flavonoid 4CL medium pass
Gher03G0024350.1 Flavonoid 4CL medium pass
Gher03G0024650.1 Flavonoid 4CL medium pass
Gher03G0027940.1 Flavonoid 4CL medium pass
Gher04G0000930.1 Flavonoid 4CL medium pass
Gher04G0001420.1 Flavonoid 4CL low borderline
Gher04G0022110.1 Flavonoid 4CL medium pass
Gher05G0000610.1 Flavonoid 4CL medium pass
Gher05G0011930.1 Flavonoid 4CL low borderline
Gher05G0015380.1 Flavonoid 4CL medium pass
Gher05G0025540.1 Flavonoid 4CL medium pass
Gher05G0036160.1 Flavonoid 4CL low borderline
Gher06G0005590.1 Flavonoid 4CL low borderline
Gher06G0024960.1 Flavonoid 4CL low borderline
Gher07G0006340.1 Flavonoid 4CL medium pass
Gher07G0006350.1 Flavonoid 4CL medium pass
Gher07G0006360.1 Flavonoid 4CL medium pass
Gher07G0010470.1 Flavonoid 4CL low borderline
Gher07G0015630.1 Flavonoid 4CL low borderline