PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2554
Candidate Protein Records
2126
Pathway-Level Records
5491
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
GherContig11140003360.1 Flavonoid ANR low borderline
Gher01G0003850.1 Flavonoid ANS/LDOX medium borderline
Gher01G0004100.1 Flavonoid ANS/LDOX medium borderline
Gher01G0008040.1 Flavonoid ANS/LDOX medium borderline
Gher03G0025400.1 Flavonoid ANS/LDOX low borderline
Gher03G0026070.1 Flavonoid ANS/LDOX low borderline
Gher06G0019080.1 Flavonoid ANS/LDOX medium borderline
Gher07G0010180.1 Flavonoid ANS/LDOX medium borderline
Gher07G0015660.1 Flavonoid ANS/LDOX medium borderline
Gher09G0011820.1 Flavonoid ANS/LDOX medium borderline
Gher09G0028570.1 Flavonoid ANS/LDOX medium borderline
Gher10G0004380.1 Flavonoid ANS/LDOX medium borderline
Gher13G0020860.1 Flavonoid ANS/LDOX medium borderline
Gher01G0004860.1 Flavonoid C4H low borderline
Gher03G0019620.1 Flavonoid C4H low borderline
Gher03G0027840.1 Flavonoid C4H medium borderline
Gher03G0027860.1 Flavonoid C4H medium borderline
Gher03G0027870.1 Flavonoid C4H medium borderline
Gher03G0027880.1 Flavonoid C4H medium borderline
Gher03G0027890.1 Flavonoid C4H medium borderline
Gher03G0027900.1 Flavonoid C4H medium borderline
Gher03G0027920.1 Flavonoid C4H medium borderline
Gher03G0027950.1 Flavonoid C4H medium borderline
Gher03G0027960.1 Flavonoid C4H medium borderline
Gher03G0027970.1 Flavonoid C4H medium borderline
Gher03G0028010.1 Flavonoid C4H low borderline
Gher03G0028510.1 Flavonoid C4H low borderline
Gher04G0024920.1 Flavonoid C4H medium borderline
Gher04G0024930.1 Flavonoid C4H medium borderline
Gher06G0024800.1 Flavonoid C4H low borderline
Gher08G0022960.1 Flavonoid C4H medium pass
Gher10G0023190.1 Flavonoid C4H medium borderline
Gher10G0026330.1 Flavonoid C4H medium borderline
Gher13G0004320.1 Flavonoid C4H medium borderline
Gher13G0004340.1 Flavonoid C4H medium borderline
Gher13G0004380.1 Flavonoid C4H medium borderline
Gher13G0004390.1 Flavonoid C4H medium borderline
Gher13G0007560.1 Flavonoid C4H medium borderline
Gher13G0027580.1 Flavonoid C4H medium pass
GherContig10250000720.1 Flavonoid C4H medium borderline
GherContig9870018650.1 Flavonoid C4H medium borderline
Gher04G0001660.1 Flavonoid CHI medium pass
Gher07G0002060.1 Flavonoid CHI low borderline
Gher07G0029510.1 Flavonoid CHI medium pass
Gher13G0002500.1 Flavonoid CHI medium pass
Gher03G0027640.1 Flavonoid CHS medium pass
Gher05G0026050.1 Flavonoid CHS medium pass
Gher05G0035720.1 Flavonoid CHS medium pass
Gher08G0018930.1 Flavonoid CHS low borderline
Gher09G0000060.1 Flavonoid CHS medium pass