PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2554
Candidate Protein Records
2126
Pathway-Level Records
5491
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Gher10G0020670.1 Phenylpropanoid COMT medium pass
Gher10G0025390.1 Phenylpropanoid COMT medium pass
Gher10G0025420.1 Phenylpropanoid COMT medium pass
Gher10G0025460.1 Phenylpropanoid COMT medium pass
Gher10G0025470.1 Phenylpropanoid COMT medium pass
Gher10G0026440.1 Phenylpropanoid COMT medium pass
Gher10G0026480.1 Phenylpropanoid COMT medium pass
Gher10G0026490.1 Phenylpropanoid COMT medium pass
Gher10G0026520.1 Phenylpropanoid COMT medium pass
Gher11G0014400.1 Phenylpropanoid COMT low borderline
Gher11G0039730.1 Phenylpropanoid COMT medium pass
Gher12G0004030.1 Phenylpropanoid COMT medium pass
Gher12G0004040.1 Phenylpropanoid COMT medium pass
Gher12G0015830.1 Phenylpropanoid COMT medium pass
Gher12G0015860.1 Phenylpropanoid COMT medium pass
Gher12G0030250.1 Phenylpropanoid COMT medium pass
Gher12G0030260.1 Phenylpropanoid COMT medium pass
Gher12G0030270.1 Phenylpropanoid COMT medium pass
Gher12G0030660.1 Phenylpropanoid COMT medium pass
Gher12G0030680.1 Phenylpropanoid COMT medium pass
Gher13G0007120.1 Phenylpropanoid COMT low borderline
Gher13G0022330.1 Phenylpropanoid COMT medium pass
Gher13G0022350.1 Phenylpropanoid COMT medium pass
Gher13G0022380.1 Phenylpropanoid COMT medium pass
GherContig810E10014040.1 Phenylpropanoid COMT medium pass
GherContig810E10014050.1 Phenylpropanoid COMT medium pass
Gher01G0013580.1 Phenylpropanoid CSE medium pass
Gher02G0008580.1 Phenylpropanoid CSE medium pass
Gher02G0015810.1 Phenylpropanoid CSE medium pass
Gher03G0002480.1 Phenylpropanoid CSE medium pass
Gher03G0003630.1 Phenylpropanoid CSE medium pass
Gher03G0018210.1 Phenylpropanoid CSE medium pass
Gher04G0004970.1 Phenylpropanoid CSE medium pass
Gher04G0004980.1 Phenylpropanoid CSE medium pass
Gher04G0005000.1 Phenylpropanoid CSE medium pass
Gher04G0005020.1 Phenylpropanoid CSE medium pass
Gher04G0005030.1 Phenylpropanoid CSE medium pass
Gher04G0005040.1 Phenylpropanoid CSE low borderline
Gher04G0005050.1 Phenylpropanoid CSE low borderline
Gher04G0005070.1 Phenylpropanoid CSE medium pass
Gher04G0005090.1 Phenylpropanoid CSE medium pass
Gher04G0005540.1 Phenylpropanoid CSE medium pass
Gher04G0020050.1 Phenylpropanoid CSE medium pass
Gher05G0003690.1 Phenylpropanoid CSE medium pass
Gher05G0005080.1 Phenylpropanoid CSE medium pass
Gher05G0016900.1 Phenylpropanoid CSE medium pass
Gher05G0016910.1 Phenylpropanoid CSE medium pass
Gher05G0020400.1 Phenylpropanoid CSE medium pass
Gher05G0020450.1 Phenylpropanoid CSE medium pass
Gher05G0022270.1 Phenylpropanoid CSE medium pass