PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2554
Candidate Protein Records
2126
Pathway-Level Records
5491
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Gher07G0006340.1 Rosmarinic Acid 4CL medium pass
Gher07G0006350.1 Rosmarinic Acid 4CL medium pass
Gher07G0006360.1 Rosmarinic Acid 4CL medium pass
Gher07G0010470.1 Rosmarinic Acid 4CL low borderline
Gher07G0015630.1 Rosmarinic Acid 4CL low borderline
Gher08G0004640.1 Rosmarinic Acid 4CL medium pass
Gher08G0020650.1 Rosmarinic Acid 4CL medium pass
Gher08G0023920.1 Rosmarinic Acid 4CL medium pass
Gher09G0009030.1 Rosmarinic Acid 4CL low borderline
Gher09G0010260.1 Rosmarinic Acid 4CL medium pass
Gher09G0019440.1 Rosmarinic Acid 4CL medium pass
Gher09G0025670.1 Rosmarinic Acid 4CL medium pass
Gher09G0030810.1 Rosmarinic Acid 4CL medium pass
Gher10G0005070.1 Rosmarinic Acid 4CL medium pass
Gher10G0007080.1 Rosmarinic Acid 4CL medium pass
Gher10G0010840.1 Rosmarinic Acid 4CL medium pass
Gher10G0011770.1 Rosmarinic Acid 4CL low borderline
Gher10G0022180.1 Rosmarinic Acid 4CL medium pass
Gher11G0002760.1 Rosmarinic Acid 4CL low borderline
Gher11G0004390.1 Rosmarinic Acid 4CL medium pass
Gher11G0019570.1 Rosmarinic Acid 4CL medium pass
Gher11G0040120.1 Rosmarinic Acid 4CL low borderline
Gher12G0019700.1 Rosmarinic Acid 4CL medium pass
Gher12G0029640.1 Rosmarinic Acid 4CL low borderline
Gher13G0012910.1 Rosmarinic Acid 4CL low borderline
Gher13G0027850.1 Rosmarinic Acid 4CL medium pass
GherContig10440001620.1 Rosmarinic Acid 4CL low borderline
Gher01G0004380.1 Rosmarinic Acid C4H low borderline
Gher01G0004390.1 Rosmarinic Acid C4H low borderline
Gher01G0004400.1 Rosmarinic Acid C4H low borderline
Gher01G0004410.1 Rosmarinic Acid C4H low borderline
Gher01G0004420.1 Rosmarinic Acid C4H low borderline
Gher01G0004440.1 Rosmarinic Acid C4H low borderline
Gher01G0004860.1 Rosmarinic Acid C4H low borderline
Gher01G0006760.1 Rosmarinic Acid C4H medium pass
Gher01G0006770.1 Rosmarinic Acid C4H medium pass
Gher01G0008370.1 Rosmarinic Acid C4H low borderline
Gher01G0009260.1 Rosmarinic Acid C4H low borderline
Gher01G0009290.1 Rosmarinic Acid C4H medium pass
Gher01G0009300.1 Rosmarinic Acid C4H low borderline
Gher01G0009320.1 Rosmarinic Acid C4H low borderline
Gher01G0009340.1 Rosmarinic Acid C4H low borderline
Gher01G0009350.1 Rosmarinic Acid C4H low borderline
Gher01G0009370.1 Rosmarinic Acid C4H low borderline
Gher01G0009380.1 Rosmarinic Acid C4H low borderline
Gher01G0009400.1 Rosmarinic Acid C4H low borderline
Gher01G0010020.1 Rosmarinic Acid C4H low borderline
Gher01G0013000.1 Rosmarinic Acid C4H low borderline
Gher01G0013100.1 Rosmarinic Acid C4H low borderline
Gher01G0020130.1 Rosmarinic Acid C4H low borderline