PlantSME Plant secondary metabolism enzyme database

Gossypium stocksii (gossypium_stocksii)

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Imported from atlas release summary for Gossypium stocksii.

2272
Candidate Protein Records
1880
Pathway-Level Records
4906
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 29.04% Alkaloid pathway 22.39% Phenylpropanoid pathway 22.29% Flavonoid pathway 11.54% Rosmarinic acid pathway 7.93% Steroid pathway 6.81%
Family Distribution
C4H 7.34% C3'H/CYP98A 6.32% BAHD 5.4% CYP76 4.1% T3O 3.83% IFS 3.83% POD 3.67% F3H 3.36%
Other Families 62.15%
More Families (98)
UGT 160 3.26% 7DLGT 158 3.22% UFGT 158 3.22% 4CL 150 3.06% DWF4/CYP90B1 113 2.3% NMT 97 1.98% F3'H/CYP75B 95 1.94% BR6OX2/CYP85A2 91 1.85% STR 90 1.83% CODM/T6ODM 87 1.77% CAD 79 1.61% H6H 77 1.57% CAS 71 1.45% LAC 69 1.41% SMT1/SMT2/SMT3 65 1.32% CYP71 65 1.32% CYP90D1 63 1.28% GES 62 1.26% TPS 62 1.26% TRI/TRII 56 1.14% 7DLH 48 0.98% CSE 48 0.98% BBE 46 0.94% HCT 46 0.94% GS 43 0.88% COMT 43 0.88% RAS 40 0.82% G8O/G8H 37 0.75% PYKS 36 0.73% F3'5'H/CYP75A 34 0.69% IFR 34 0.69% T16H 33 0.67% IO 33 0.67% CPD/CYP90A1 29 0.59% 16OMT 28 0.57% BR6OX1/CYP85A1 28 0.57% NCS 27 0.55% F5H/CYP84A 27 0.55% ANR 26 0.53% SGD 25 0.51% SLS 24 0.49% FNS 24 0.49% PMT 22 0.45% CCR 22 0.45% TAT 22 0.45% CYP51G1 22 0.45% PAL 21 0.43% 8HGO 19 0.39% COR 19 0.39% ROT3/CYP90C1 17 0.35% SQE 16 0.33% LAMT 14 0.29% CNMT 13 0.26% FPPS 13 0.26% GGPPS 12 0.24% ANS/LDOX 11 0.22% DFR 10 0.2% CCoAOMT 10 0.2% CHS 9 0.18% TYDC_DDC 8 0.16% MPO 8 0.16% ISY 8 0.16% HMGR 8 0.16% CPR 7 0.14% SQS/FDFT1 7 0.14% SMO1/SMO2 7 0.14% HPPR 6 0.12% DET2 6 0.12% AACT 6 0.12% DXS 6 0.12% MVK 5 0.1% CYP719 4 0.08% CYP80B1 4 0.08% CHI 4 0.08% DWF5 4 0.08% HMGS 4 0.08% MVD 4 0.08% TDC 3 0.06% 6OMT_4OMT_SOMT 3 0.06% ADC 3 0.06% FLS 3 0.06% HDR/IspH 3 0.06% MCT/IspD 3 0.06% DXR 3 0.06% XMT_MXMT_DXMT 2 0.04% ODC 2 0.04% FK 2 0.04% DWF1 2 0.04% DWF7 2 0.04% MDS/IspF 2 0.04% HDS/IspG 2 0.04% GPPS 2 0.04% PMK 2 0.04% CYP80F1 1 0.02% CPI1 1 0.02% HYD1 1 0.02% CMK/IspE 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 546 21 BAHD (199) View species results
Alkaloid pathway 421 20 7DLGT (76) View species results
Phenylpropanoid pathway 419 11 POD (175) View species results
Flavonoid pathway 217 8 UFGT (147) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 128 12 CAS (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2015 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 351 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
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Protein/Isoform Record Pathway Family Confidence Status Best Target
gossypium_stocksii_Gsto_13G006090.1 Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
gossypium_stocksii_Gsto_13G009350.1 Terpenoid UGT medium pass UGT__00018__sp_A0A224AM54_708G1_CITJP
gossypium_stocksii_Gsto_13G020560.1 Terpenoid UGT medium pass UGT__00019__sp_A0A2R4LMF9_73C25_BARVU
gossypium_stocksii_Gsto_13G028560.1 Terpenoid UGT medium pass UGT__00027__sp_D3UAG0_U71K1_MALDO
gossypium_stocksii_Gsto_13G028570.1 Terpenoid UGT medium pass UGT__00027__sp_D3UAG0_U71K1_MALDO
gossypium_stocksii_Gsto_13G029560.1 Terpenoid UGT medium pass UGT__00108__sp_Q9SYK9_U74E2_ARATH
gossypium_stocksii_Gsto_13G029570.1 Terpenoid UGT medium pass UGT__00034__sp_F8WLS6_UGT6_CATRO
gossypium_stocksii_Gsto_13G029580.1 Terpenoid UGT medium pass UGT__00105__sp_Q9SK82_U85A1_ARATH
gossypium_stocksii_Gsto_Contig00021G000010.1 Terpenoid UGT medium pass UGT__00116__sp_U3UA11_UGT7_CATRO
gossypium_stocksii_Gsto_Contig00021G000020.1 Terpenoid UGT medium pass UGT__00116__sp_U3UA11_UGT7_CATRO