PlantSME Plant secondary metabolism enzyme database

Juglans microcarpa (juglans_microcarpa)

Imported from atlas release summary for Juglans microcarpa.

2647
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.39% Alkaloid pathway 21.27% Phenylpropanoid pathway 19.76% Flavonoid pathway 11.94% Rosmarinic acid pathway 10.01% Steroid pathway 7.63%
Family Distribution
C4H 7.12% C3'H/CYP98A 6.74% IFS 4.69% CYP76 4.68% BAHD 4.62% T3O 3.99% UGT 3.54% 4CL 3.21%
Other Families 61.41%
More Families (98)
7DLGT 216 3.08% POD 208 2.97% UFGT 200 2.85% F3H 193 2.75% BR6OX2/CYP85A2 166 2.37% DWF4/CYP90B1 163 2.32% CAD 157 2.24% F3'H/CYP75B 131 1.87% CAS 119 1.7% TPS 119 1.7% CODM/T6ODM 118 1.68% GES 111 1.58% STR 102 1.45% NMT 102 1.45% H6H 95 1.35% SMT1/SMT2/SMT3 93 1.33% CYP71 92 1.31% TRI/TRII 84 1.2% CYP90D1 82 1.17% LAC 79 1.13% COMT 72 1.03% IO 64 0.91% GS 64 0.91% BBE 63 0.9% T16H 61 0.87% HCT 61 0.87% G8O/G8H 57 0.81% PYKS 50 0.71% FNS 50 0.71% IFR 50 0.71% TAT 46 0.66% RAS 44 0.63% F3'5'H/CYP75A 42 0.6% CPD/CYP90A1 42 0.6% ANR 41 0.58% PAL 39 0.56% 16OMT 37 0.53% 7DLH 36 0.51% PMT 36 0.51% CSE 35 0.5% BR6OX1/CYP85A1 35 0.5% SLS 34 0.48% SGD 34 0.48% NCS 34 0.48% F5H/CYP84A 32 0.46% CCR 32 0.46% LAMT 30 0.43% CHS 26 0.37% 8HGO 24 0.34% COR 21 0.3% CCoAOMT 21 0.3% CYP80B1 20 0.29% ROT3/CYP90C1 20 0.29% GGPPS 20 0.29% CYP719 19 0.27% SQE 19 0.27% CPR 18 0.26% ANS/LDOX 17 0.24% ISY 14 0.2% DFR 14 0.2% CNMT 12 0.17% FPPS 12 0.17% CYP51G1 11 0.16% AACT 11 0.16% TYDC_DDC 10 0.14% HPPR 10 0.14% SQS/FDFT1 10 0.14% MPO 9 0.13% 6OMT_4OMT_SOMT 8 0.11% MVK 8 0.11% MVD 8 0.11% CHI 7 0.1% SMO1/SMO2 7 0.1% HMGR 7 0.1% DET2 6 0.09% DXS 6 0.09% DWF7 5 0.07% CPI1 5 0.07% DWF5 5 0.07% HYD1 4 0.06% CMK/IspE 4 0.06% MCT/IspD 4 0.06% TDC 3 0.04% CYP80F1 3 0.04% ADC 3 0.04% XMT_MXMT_DXMT 3 0.04% DXR 3 0.04% FLS 2 0.03% FK 2 0.03% GPPS 2 0.03% IDI 2 0.03% HDR/IspH 2 0.03% HMGS 2 0.03% MDS/IspF 2 0.03% PMK 2 0.03% ODC 1 0.01% DWF1 1 0.01% HDS/IspG 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 778 19 BAHD (259) View species results
Alkaloid pathway 563 23 GES (102) View species results
Phenylpropanoid pathway 523 11 POD (186) View species results
Flavonoid pathway 316 13 UFGT (179) View species results
Rosmarinic acid pathway 265 7 C4H (130) View species results
Steroid pathway 202 13 CAS (95) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3019 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 429 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CMK/IspE
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Gene Pathway Family Confidence Status
Jmicscaffold1320105550.1 Terpenoid CMK/IspE low borderline
Jmicscaffold23390147770.1 Terpenoid CMK/IspE high pass
Jmicscaffold24470152500.1 Terpenoid CMK/IspE low borderline
Jmicscaffold55560273030.1 Terpenoid CMK/IspE high pass