Juglans microcarpa (juglans_microcarpa)
Imported from atlas release summary for Juglans microcarpa.
2647
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2647
Candidate Genes
C4H
7.12%
C3'H/CYP98A
6.74%
IFS
4.69%
CYP76
4.68%
BAHD
4.62%
T3O
3.99%
UGT
3.54%
4CL
3.21%
Other Families
61.41%
More Families (98)
7DLGT
216
3.08%
POD
208
2.97%
UFGT
200
2.85%
F3H
193
2.75%
BR6OX2/CYP85A2
166
2.37%
DWF4/CYP90B1
163
2.32%
CAD
157
2.24%
F3'H/CYP75B
131
1.87%
CAS
119
1.7%
TPS
119
1.7%
CODM/T6ODM
118
1.68%
GES
111
1.58%
STR
102
1.45%
NMT
102
1.45%
H6H
95
1.35%
SMT1/SMT2/SMT3
93
1.33%
CYP71
92
1.31%
TRI/TRII
84
1.2%
CYP90D1
82
1.17%
LAC
79
1.13%
COMT
72
1.03%
IO
64
0.91%
GS
64
0.91%
BBE
63
0.9%
T16H
61
0.87%
HCT
61
0.87%
G8O/G8H
57
0.81%
PYKS
50
0.71%
FNS
50
0.71%
IFR
50
0.71%
TAT
46
0.66%
RAS
44
0.63%
F3'5'H/CYP75A
42
0.6%
CPD/CYP90A1
42
0.6%
ANR
41
0.58%
PAL
39
0.56%
16OMT
37
0.53%
7DLH
36
0.51%
PMT
36
0.51%
CSE
35
0.5%
BR6OX1/CYP85A1
35
0.5%
SLS
34
0.48%
SGD
34
0.48%
NCS
34
0.48%
F5H/CYP84A
32
0.46%
CCR
32
0.46%
LAMT
30
0.43%
CHS
26
0.37%
8HGO
24
0.34%
COR
21
0.3%
CCoAOMT
21
0.3%
CYP80B1
20
0.29%
ROT3/CYP90C1
20
0.29%
GGPPS
20
0.29%
CYP719
19
0.27%
SQE
19
0.27%
CPR
18
0.26%
ANS/LDOX
17
0.24%
ISY
14
0.2%
DFR
14
0.2%
CNMT
12
0.17%
FPPS
12
0.17%
CYP51G1
11
0.16%
AACT
11
0.16%
TYDC_DDC
10
0.14%
HPPR
10
0.14%
SQS/FDFT1
10
0.14%
MPO
9
0.13%
6OMT_4OMT_SOMT
8
0.11%
MVK
8
0.11%
MVD
8
0.11%
CHI
7
0.1%
SMO1/SMO2
7
0.1%
HMGR
7
0.1%
DET2
6
0.09%
DXS
6
0.09%
DWF7
5
0.07%
CPI1
5
0.07%
DWF5
5
0.07%
HYD1
4
0.06%
CMK/IspE
4
0.06%
MCT/IspD
4
0.06%
TDC
3
0.04%
CYP80F1
3
0.04%
ADC
3
0.04%
XMT_MXMT_DXMT
3
0.04%
DXR
3
0.04%
FLS
2
0.03%
FK
2
0.03%
GPPS
2
0.03%
IDI
2
0.03%
HDR/IspH
2
0.03%
HMGS
2
0.03%
MDS/IspF
2
0.03%
PMK
2
0.03%
ODC
1
0.01%
DWF1
1
0.01%
HDS/IspG
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 778 | 19 | BAHD (259) | View species results |
| Alkaloid pathway | 563 | 23 | GES (102) | View species results |
| Phenylpropanoid pathway | 523 | 11 | POD (186) | View species results |
| Flavonoid pathway | 316 | 13 | UFGT (179) | View species results |
| Rosmarinic acid pathway | 265 | 7 | C4H (130) | View species results |
| Steroid pathway | 202 | 13 | CAS (95) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3019 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 429 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Jmicscaffold27060164140.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |
| Jmicscaffold29290170490.1 | Alkaloid | GES | medium | pass | GES__00003__sp_C0KWV6_GRNL7_PERFR |
| Jmicscaffold29810173260.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |
| Jmicscaffold30310174800.2 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| Jmicscaffold30700176760.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |
| Jmicscaffold32620183950.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Jmicscaffold3310186070.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Jmicscaffold33330187420.1 | Alkaloid | GES | low | borderline | GES__00011__sp_R9QMR5_ATERP_PINBN |
| Jmicscaffold33330187460.1 | Alkaloid | GES | low | borderline | GES__00011__sp_R9QMR5_ATERP_PINBN |
| Jmicscaffold34630191390.1 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| Jmicscaffold35690196620.1 | Alkaloid | GES | medium | pass | GES__00010__sp_Q93YV0_GES_ARATH |
| Jmicscaffold35690196640.1 | Alkaloid | GES | medium | pass | GES__00010__sp_Q93YV0_GES_ARATH |
| Jmicscaffold36270199580.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Jmicscaffold3670201700.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Jmicscaffold38820210690.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Jmicscaffold39470213340.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |
| Jmicscaffold43320227480.1 | Alkaloid | GES | medium | pass | GES__00005__sp_Q308N0_GRNL6_PERFR |
| Jmicscaffold44860231930.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Jmicscaffold45160233330.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Jmicscaffold45250233530.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Jmicscaffold45940235900.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Jmicscaffold46680238520.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |
| Jmicscaffold46680238550.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |
| Jmicscaffold47750242890.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |
| Jmicscaffold51060256410.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Jmicscaffold51250257290.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Jmicscaffold51550259380.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Jmicscaffold53750266440.2 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Jmicscaffold5560273490.1 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| Jmicscaffold57730280310.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Jmicscaffold61240290610.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Jmicscaffold61530291660.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |
| Jmicscaffold61800292220.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Jmicscaffold65340304730.1 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| Jmicscaffold66690311140.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Jmicscaffold66960312120.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Jmicscaffold67010312320.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Jmicscaffold68230318160.1 | Alkaloid | GES | medium | pass | GES__00002__sp_C0KWV4_GRNLG_PERFH |
| Jmicscaffold69010321430.1 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| Jmicscaffold69280322880.1 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| Jmicscaffold70040325840.1 | Alkaloid | GES | medium | pass | GES__00005__sp_Q308N0_GRNL6_PERFR |
| Jmicscaffold73780338620.1 | Alkaloid | GES | medium | pass | GES__00005__sp_Q308N0_GRNL6_PERFR |
| Jmicscaffold78440352310.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |
| Jmicscaffold79210355000.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Jmicscaffold7950355510.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Jmicscaffold79820356440.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Jmicscaffold81470361340.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Jmicscaffold82330363220.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Jmicscaffold86620374830.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |
| Jmicscaffold87950377290.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |