PlantSME Plant secondary metabolism enzyme database

Juglans nigra (juglans_nigra)

Imported from atlas release summary for Juglans nigra.

1793
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 494 19 BAHD (179) View species results
Phenylpropanoid pathway 393 11 POD (147) View species results
Alkaloid pathway 383 23 7DLGT (71) View species results
Flavonoid pathway 245 10 UFGT (152) View species results
Rosmarinic acid pathway 166 7 C4H (68) View species results
Steroid pathway 112 12 CAS (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1742 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 315 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BR6OX2/CYP85A2
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Gene Pathway Family Confidence Status
Jnigscaffold33710128800.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold33930129410.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold34530131500.2 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold37710142830.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold41160153120.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold41880156640.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold45530167140.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold45580167340.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold46780171030.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold47420173200.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold47420173240.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold48980179070.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold49520180010.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold49880181130.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold52590187130.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold53860191500.2 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold5400192270.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold56070198060.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold60700209210.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold62290212390.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold64460217460.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold65380220130.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold68720226670.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold72160236880.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold73440241130.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold77180249740.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold7750250480.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold78110251850.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold80760256710.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold81110257550.1 Steroid BR6OX2/CYP85A2 medium borderline
Jnigscaffold83900262590.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold84000262730.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold86410266790.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold86870267490.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold87070268380.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold88020269900.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold8980274310.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold91100276910.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold91450278020.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold91670279020.1 Steroid BR6OX2/CYP85A2 low borderline