Juglans nigra (juglans_nigra)
Imported from atlas release summary for Juglans nigra.
1793
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1793
Candidate Genes
C4H
6.28%
C3'H/CYP98A
5.97%
BAHD
5.18%
IFS
4.34%
CYP76
4.01%
UGT
3.98%
4CL
3.72%
UFGT
3.63%
Other Families
62.89%
More Families (97)
7DLGT
163
3.61%
POD
156
3.45%
T3O
155
3.43%
F3H
132
2.92%
DWF4/CYP90B1
96
2.12%
BR6OX2/CYP85A2
90
1.99%
CODM/T6ODM
84
1.86%
STR
80
1.77%
F3'H/CYP75B
75
1.66%
CAD
75
1.66%
NMT
70
1.55%
H6H
68
1.5%
SMT1/SMT2/SMT3
63
1.39%
CYP71
61
1.35%
COMT
60
1.33%
CAS
60
1.33%
TRI/TRII
57
1.26%
LAC
55
1.22%
HCT
52
1.15%
PYKS
51
1.13%
CYP90D1
47
1.04%
TPS
44
0.97%
GS
42
0.93%
GES
42
0.93%
IO
41
0.91%
T16H
39
0.86%
16OMT
37
0.82%
CSE
37
0.82%
G8O/G8H
36
0.8%
FNS
36
0.8%
BBE
34
0.75%
TAT
34
0.75%
SGD
30
0.66%
RAS
29
0.64%
PMT
28
0.62%
LAMT
27
0.6%
IFR
27
0.6%
F5H/CYP84A
26
0.58%
7DLH
25
0.55%
CPD/CYP90A1
24
0.53%
NCS
23
0.51%
ANR
23
0.51%
SLS
22
0.49%
BR6OX1/CYP85A1
22
0.49%
COR
20
0.44%
CHS
19
0.42%
CCR
19
0.42%
PAL
18
0.4%
F3'5'H/CYP75A
18
0.4%
CPR
16
0.35%
CNMT
14
0.31%
8HGO
12
0.27%
ANS/LDOX
12
0.27%
SQE
12
0.27%
DFR
11
0.24%
CCoAOMT
11
0.24%
ROT3/CYP90C1
11
0.24%
GGPPS
10
0.22%
TYDC_DDC
9
0.2%
MPO
8
0.18%
ISY
8
0.18%
CYP51G1
8
0.18%
FPPS
8
0.18%
6OMT_4OMT_SOMT
7
0.15%
CYP80B1
7
0.15%
MVK
7
0.15%
MVD
7
0.15%
AACT
7
0.15%
CYP719
6
0.13%
HPPR
6
0.13%
DET2
6
0.13%
DXS
6
0.13%
SQS/FDFT1
5
0.11%
CHI
4
0.09%
SMO1/SMO2
4
0.09%
DWF7
4
0.09%
HMGR
4
0.09%
TDC
3
0.07%
ODC
3
0.07%
FLS
3
0.07%
CPI1
3
0.07%
HMGS
3
0.07%
CYP80F1
2
0.04%
ADC
2
0.04%
HYD1
2
0.04%
FK
2
0.04%
CMK/IspE
2
0.04%
PMK
2
0.04%
IDI
2
0.04%
DXR
2
0.04%
HDR/IspH
2
0.04%
MDS/IspF
2
0.04%
XMT_MXMT_DXMT
1
0.02%
DWF5
1
0.02%
DWF1
1
0.02%
HDS/IspG
1
0.02%
MCT/IspD
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 494 | 19 | BAHD (179) | View species results |
| Phenylpropanoid pathway | 393 | 11 | POD (147) | View species results |
| Alkaloid pathway | 383 | 23 | 7DLGT (71) | View species results |
| Flavonoid pathway | 245 | 10 | UFGT (152) | View species results |
| Rosmarinic acid pathway | 166 | 7 | C4H (68) | View species results |
| Steroid pathway | 112 | 12 | CAS (46) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1742 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 315 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| JnigC5325270001990.1 | Alkaloid | PMT | medium | borderline |
| Jnigscaffold10600024420.1 | Alkaloid | PMT | medium | pass |
| Jnigscaffold13760037300.1 | Alkaloid | PMT | low | borderline |
| Jnigscaffold13940038500.1 | Alkaloid | PMT | low | borderline |
| Jnigscaffold18560056630.1 | Alkaloid | PMT | medium | borderline |
| Jnigscaffold2660092400.1 | Alkaloid | PMT | low | borderline |
| Jnigscaffold27600100120.1 | Alkaloid | PMT | low | borderline |
| Jnigscaffold27960103200.1 | Alkaloid | PMT | low | borderline |
| Jnigscaffold30520115140.1 | Alkaloid | PMT | medium | pass |
| Jnigscaffold30970117100.1 | Alkaloid | PMT | low | borderline |
| Jnigscaffold38570145680.1 | Alkaloid | PMT | low | borderline |
| Jnigscaffold39260146820.1 | Alkaloid | PMT | medium | borderline |
| Jnigscaffold42630159550.1 | Alkaloid | PMT | medium | pass |
| Jnigscaffold48150175940.1 | Alkaloid | PMT | medium | borderline |
| Jnigscaffold48190176060.1 | Alkaloid | PMT | low | borderline |
| Jnigscaffold4970180460.1 | Alkaloid | PMT | low | borderline |
| Jnigscaffold53500190650.1 | Alkaloid | PMT | low | borderline |
| Jnigscaffold5680200340.1 | Alkaloid | PMT | low | borderline |
| Jnigscaffold63860215430.1 | Alkaloid | PMT | low | borderline |
| Jnigscaffold70370232430.1 | Alkaloid | PMT | medium | pass |
| Jnigscaffold72080236490.2 | Alkaloid | PMT | medium | pass |
| Jnigscaffold74020242180.1 | Alkaloid | PMT | low | borderline |
| Jnigscaffold77400250440.2 | Alkaloid | PMT | medium | pass |
| Jnigscaffold77870251200.1 | Alkaloid | PMT | medium | borderline |
| Jnigscaffold85640265860.1 | Alkaloid | PMT | medium | borderline |
| Jnigscaffold88380270430.1 | Alkaloid | PMT | low | borderline |
| Jnigscaffold8940273030.1 | Alkaloid | PMT | medium | borderline |
| Jnigscaffold91710279490.1 | Alkaloid | PMT | low | borderline |