PlantSME Plant secondary metabolism enzyme database

Juglans nigra (juglans_nigra)

Imported from atlas release summary for Juglans nigra.

1793
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 494 19 BAHD (179) View species results
Phenylpropanoid pathway 393 11 POD (147) View species results
Alkaloid pathway 383 23 7DLGT (71) View species results
Flavonoid pathway 245 10 UFGT (152) View species results
Rosmarinic acid pathway 166 7 C4H (68) View species results
Steroid pathway 112 12 CAS (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1742 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 315 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
JnigC5335730002340.1 Steroid BR6OX1/CYP85A1 medium borderline
Jnigscaffold12600033480.1 Steroid BR6OX1/CYP85A1 medium borderline
Jnigscaffold12600033490.1 Steroid BR6OX1/CYP85A1 medium borderline
Jnigscaffold21290066430.1 Steroid BR6OX1/CYP85A1 medium borderline
Jnigscaffold2330075770.1 Steroid BR6OX1/CYP85A1 medium borderline
Jnigscaffold29700111380.1 Steroid BR6OX1/CYP85A1 medium borderline
Jnigscaffold32330123130.1 Steroid BR6OX1/CYP85A1 low borderline
Jnigscaffold32370123210.1 Steroid BR6OX1/CYP85A1 medium borderline
Jnigscaffold33410126570.1 Steroid BR6OX1/CYP85A1 medium borderline
Jnigscaffold33710128810.1 Steroid BR6OX1/CYP85A1 medium borderline
Jnigscaffold33710128840.1 Steroid BR6OX1/CYP85A1 medium borderline
Jnigscaffold41340154440.1 Steroid BR6OX1/CYP85A1 medium borderline
Jnigscaffold43240161210.1 Steroid BR6OX1/CYP85A1 medium borderline
Jnigscaffold46140169060.1 Steroid BR6OX1/CYP85A1 medium borderline
Jnigscaffold46140169380.1 Steroid BR6OX1/CYP85A1 medium borderline
Jnigscaffold46450170120.1 Steroid BR6OX1/CYP85A1 medium borderline
Jnigscaffold48320176880.1 Steroid BR6OX1/CYP85A1 low borderline
Jnigscaffold48320177140.1 Steroid BR6OX1/CYP85A1 medium borderline
Jnigscaffold50770182920.1 Steroid BR6OX1/CYP85A1 medium borderline
Jnigscaffold55160195430.1 Steroid BR6OX1/CYP85A1 low borderline
Jnigscaffold74990244520.1 Steroid BR6OX1/CYP85A1 low borderline
Jnigscaffold91730279650.1 Steroid BR6OX1/CYP85A1 low borderline
JnigC5389550004970.1 Steroid BR6OX2/CYP85A2 low borderline
JnigC5407130007160.1 Steroid BR6OX2/CYP85A2 low borderline
JnigC5417710008360.2 Steroid BR6OX2/CYP85A2 low borderline
JnigC5418530008470.1 Steroid BR6OX2/CYP85A2 low borderline
JnigC5418570008530.1 Steroid BR6OX2/CYP85A2 low borderline
JnigC5418570008550.1 Steroid BR6OX2/CYP85A2 low borderline
JnigC5437970013270.1 Steroid BR6OX2/CYP85A2 low borderline
JnigC5439850013800.1 Steroid BR6OX2/CYP85A2 low borderline
JnigC5443910016220.1 Steroid BR6OX2/CYP85A2 low borderline
JnigC5443910016310.1 Steroid BR6OX2/CYP85A2 low borderline
JnigC5444010016810.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold10330022860.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold10520023660.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold10840026120.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold11710029320.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold12310031400.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold12810033740.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold13030034450.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold13940038380.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold16580049430.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold1710051640.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold1730052210.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold18100055500.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold1840056340.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold19110057870.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold19230058660.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold19750060670.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold1980060960.1 Steroid BR6OX2/CYP85A2 low borderline