PlantSME Plant secondary metabolism enzyme database

Juglans nigra (juglans_nigra)

Imported from atlas release summary for Juglans nigra.

1793
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 494 19 BAHD (179) View species results
Phenylpropanoid pathway 393 11 POD (147) View species results
Alkaloid pathway 383 23 7DLGT (71) View species results
Flavonoid pathway 245 10 UFGT (152) View species results
Rosmarinic acid pathway 166 7 C4H (68) View species results
Steroid pathway 112 12 CAS (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1742 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 315 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
Reset
Gene Pathway Family Confidence Status
JnigC5279590000930.1 Alkaloid IO medium borderline
JnigC5335730002340.1 Alkaloid IO medium borderline
JnigC5400630005980.1 Alkaloid IO medium borderline
JnigC5439790013770.1 Alkaloid IO low borderline
JnigC5442510015660.1 Alkaloid IO medium borderline
Jnigscaffold10050020300.1 Alkaloid IO medium borderline
Jnigscaffold160046180.1 Alkaloid IO medium borderline
Jnigscaffold1710051640.1 Alkaloid IO medium borderline
Jnigscaffold20610064530.1 Alkaloid IO medium borderline
Jnigscaffold2330075770.1 Alkaloid IO medium borderline
Jnigscaffold23780078000.1 Alkaloid IO medium borderline
Jnigscaffold27220096270.1 Alkaloid IO medium borderline
Jnigscaffold27790101650.1 Alkaloid IO medium pass
Jnigscaffold29700111180.1 Alkaloid IO low borderline
Jnigscaffold2990112200.1 Alkaloid IO medium borderline
Jnigscaffold30520115220.1 Alkaloid IO medium borderline
Jnigscaffold32330123130.1 Alkaloid IO medium borderline
Jnigscaffold33710128810.1 Alkaloid IO medium borderline
Jnigscaffold37710142830.1 Alkaloid IO medium borderline
Jnigscaffold41160153120.1 Alkaloid IO medium borderline
Jnigscaffold42170157820.1 Alkaloid IO low borderline
Jnigscaffold46140169380.1 Alkaloid IO medium borderline
Jnigscaffold46450170120.1 Alkaloid IO medium borderline
Jnigscaffold46450170140.1 Alkaloid IO medium borderline
Jnigscaffold49520180010.1 Alkaloid IO medium borderline
Jnigscaffold52480186870.1 Alkaloid IO medium borderline
Jnigscaffold53400190190.1 Alkaloid IO low borderline
Jnigscaffold58810205800.1 Alkaloid IO medium borderline
Jnigscaffold60960209820.1 Alkaloid IO medium borderline
Jnigscaffold62290212390.1 Alkaloid IO high pass
Jnigscaffold65010218490.1 Alkaloid IO medium borderline
Jnigscaffold71170234360.1 Alkaloid IO medium borderline
Jnigscaffold76200247960.1 Alkaloid IO medium pass
Jnigscaffold7930253390.1 Alkaloid IO low borderline
Jnigscaffold83320261370.1 Alkaloid IO medium borderline
Jnigscaffold84000262730.1 Alkaloid IO medium borderline
Jnigscaffold86870267490.1 Alkaloid IO medium borderline
Jnigscaffold87670269230.1 Alkaloid IO low borderline
Jnigscaffold90390275340.2 Alkaloid IO medium borderline
Jnigscaffold90390275340.3 Alkaloid IO low borderline
Jnigscaffold91670279020.1 Alkaloid IO medium borderline