PlantSME Plant secondary metabolism enzyme database

Juglans nigra (juglans_nigra)

Imported from atlas release summary for Juglans nigra.

1793
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 494 19 BAHD (179) View species results
Phenylpropanoid pathway 393 11 POD (147) View species results
Alkaloid pathway 383 23 7DLGT (71) View species results
Flavonoid pathway 245 10 UFGT (152) View species results
Rosmarinic acid pathway 166 7 C4H (68) View species results
Steroid pathway 112 12 CAS (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1742 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 315 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
JnigC5334250002280.1 Alkaloid T3O medium borderline
JnigC5389550004970.1 Alkaloid T3O medium borderline
JnigC5397690005670.1 Alkaloid T3O medium borderline
JnigC5417710008360.2 Alkaloid T3O medium borderline
JnigC5423130009280.2 Alkaloid T3O medium borderline
JnigC5433190011300.1 Alkaloid T3O medium borderline
JnigC5433690011560.1 Alkaloid T3O medium pass
JnigC5437970013270.1 Alkaloid T3O low borderline
JnigC5439850013820.1 Alkaloid T3O medium pass
JnigC5441690014730.1 Alkaloid T3O low borderline
JnigC5442890015920.1 Alkaloid T3O medium pass
JnigC5443910016220.1 Alkaloid T3O low borderline
JnigC5443910016310.1 Alkaloid T3O medium borderline
Jnigscaffold10070021490.1 Alkaloid T3O low borderline
Jnigscaffold10330022860.1 Alkaloid T3O medium borderline
Jnigscaffold10520023420.2 Alkaloid T3O medium borderline
Jnigscaffold11710029320.1 Alkaloid T3O low borderline
Jnigscaffold12310031400.1 Alkaloid T3O medium borderline
Jnigscaffold1250032560.1 Alkaloid T3O medium borderline
Jnigscaffold12600033480.1 Alkaloid T3O medium pass
Jnigscaffold12600033490.1 Alkaloid T3O medium pass
Jnigscaffold12820033890.1 Alkaloid T3O low borderline
Jnigscaffold13180035630.1 Alkaloid T3O medium pass
Jnigscaffold13940038280.1 Alkaloid T3O medium borderline
Jnigscaffold16820049860.1 Alkaloid T3O medium borderline
Jnigscaffold1730052210.1 Alkaloid T3O medium borderline
Jnigscaffold17720053610.1 Alkaloid T3O medium borderline
Jnigscaffold17720053720.1 Alkaloid T3O medium borderline
Jnigscaffold1840056340.1 Alkaloid T3O medium borderline
Jnigscaffold19110057870.1 Alkaloid T3O medium borderline
Jnigscaffold1940059610.1 Alkaloid T3O medium borderline
Jnigscaffold1980060950.1 Alkaloid T3O low borderline
Jnigscaffold20260062620.2 Alkaloid T3O medium borderline
Jnigscaffold20580064250.1 Alkaloid T3O medium borderline
Jnigscaffold20580064320.1 Alkaloid T3O medium borderline
Jnigscaffold20610064520.1 Alkaloid T3O medium pass
Jnigscaffold20880065490.1 Alkaloid T3O low borderline
Jnigscaffold21290066430.1 Alkaloid T3O medium pass
Jnigscaffold23100073300.1 Alkaloid T3O medium pass
Jnigscaffold23110073350.1 Alkaloid T3O medium pass
Jnigscaffold23110073390.1 Alkaloid T3O medium borderline
Jnigscaffold23230074300.1 Alkaloid T3O medium pass
Jnigscaffold23480076890.1 Alkaloid T3O low borderline
Jnigscaffold23860078460.1 Alkaloid T3O medium borderline
Jnigscaffold23940079360.1 Alkaloid T3O low borderline
Jnigscaffold24690083040.1 Alkaloid T3O medium borderline
Jnigscaffold24880083480.1 Alkaloid T3O low borderline
Jnigscaffold25430086900.1 Alkaloid T3O medium pass
Jnigscaffold25460087070.1 Alkaloid T3O medium borderline
Jnigscaffold25540087930.1 Alkaloid T3O medium borderline