Juglans nigra (juglans_nigra)
Imported from atlas release summary for Juglans nigra.
2125
Candidate Protein Records
1793
Pathway-Level Records
4519
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4519
Family-Level Calls
C4H
6.28%
C3'H/CYP98A
5.97%
BAHD
5.18%
IFS
4.34%
CYP76
4.01%
UGT
3.98%
4CL
3.72%
UFGT
3.63%
Other Families
62.89%
More Families (97)
7DLGT
163
3.61%
POD
156
3.45%
T3O
155
3.43%
F3H
132
2.92%
DWF4/CYP90B1
96
2.12%
BR6OX2/CYP85A2
90
1.99%
CODM/T6ODM
84
1.86%
STR
80
1.77%
F3'H/CYP75B
75
1.66%
CAD
75
1.66%
NMT
70
1.55%
H6H
68
1.5%
SMT1/SMT2/SMT3
63
1.39%
CYP71
61
1.35%
COMT
60
1.33%
CAS
60
1.33%
TRI/TRII
57
1.26%
LAC
55
1.22%
HCT
52
1.15%
PYKS
51
1.13%
CYP90D1
47
1.04%
TPS
44
0.97%
GS
42
0.93%
GES
42
0.93%
IO
41
0.91%
T16H
39
0.86%
16OMT
37
0.82%
CSE
37
0.82%
G8O/G8H
36
0.8%
FNS
36
0.8%
BBE
34
0.75%
TAT
34
0.75%
SGD
30
0.66%
RAS
29
0.64%
PMT
28
0.62%
LAMT
27
0.6%
IFR
27
0.6%
F5H/CYP84A
26
0.58%
7DLH
25
0.55%
CPD/CYP90A1
24
0.53%
NCS
23
0.51%
ANR
23
0.51%
SLS
22
0.49%
BR6OX1/CYP85A1
22
0.49%
COR
20
0.44%
CHS
19
0.42%
CCR
19
0.42%
PAL
18
0.4%
F3'5'H/CYP75A
18
0.4%
CPR
16
0.35%
CNMT
14
0.31%
8HGO
12
0.27%
ANS/LDOX
12
0.27%
SQE
12
0.27%
DFR
11
0.24%
CCoAOMT
11
0.24%
ROT3/CYP90C1
11
0.24%
GGPPS
10
0.22%
TYDC_DDC
9
0.2%
MPO
8
0.18%
ISY
8
0.18%
CYP51G1
8
0.18%
FPPS
8
0.18%
6OMT_4OMT_SOMT
7
0.15%
CYP80B1
7
0.15%
MVK
7
0.15%
MVD
7
0.15%
AACT
7
0.15%
CYP719
6
0.13%
HPPR
6
0.13%
DET2
6
0.13%
DXS
6
0.13%
SQS/FDFT1
5
0.11%
CHI
4
0.09%
SMO1/SMO2
4
0.09%
DWF7
4
0.09%
HMGR
4
0.09%
TDC
3
0.07%
ODC
3
0.07%
FLS
3
0.07%
CPI1
3
0.07%
HMGS
3
0.07%
CYP80F1
2
0.04%
ADC
2
0.04%
HYD1
2
0.04%
FK
2
0.04%
CMK/IspE
2
0.04%
PMK
2
0.04%
IDI
2
0.04%
DXR
2
0.04%
HDR/IspH
2
0.04%
MDS/IspF
2
0.04%
XMT_MXMT_DXMT
1
0.02%
DWF5
1
0.02%
DWF1
1
0.02%
HDS/IspG
1
0.02%
MCT/IspD
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 494 | 19 | BAHD (179) | View species results |
| Phenylpropanoid pathway | 393 | 11 | POD (147) | View species results |
| Alkaloid pathway | 383 | 23 | 7DLGT (71) | View species results |
| Flavonoid pathway | 245 | 10 | UFGT (152) | View species results |
| Rosmarinic acid pathway | 166 | 7 | C4H (68) | View species results |
| Steroid pathway | 112 | 12 | CAS (46) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1742 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 315 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Jnigscaffold74020242150.1 | Alkaloid | PYKS | low | borderline |
| Jnigscaffold74990244370.1 | Alkaloid | PYKS | high | pass |
| Jnigscaffold78740252790.1 | Alkaloid | PYKS | low | borderline |
| Jnigscaffold82180259030.1 | Alkaloid | PYKS | low | borderline |
| Jnigscaffold83110260880.1 | Alkaloid | PYKS | medium | pass |
| Jnigscaffold83430262050.1 | Alkaloid | PYKS | low | borderline |
| Jnigscaffold84650264090.1 | Alkaloid | PYKS | medium | pass |
| Jnigscaffold84740264110.1 | Alkaloid | PYKS | high | pass |
| Jnigscaffold85040264520.1 | Alkaloid | PYKS | low | borderline |
| Jnigscaffold91760280100.1 | Alkaloid | PYKS | high | pass |
| Jnigscaffold10050020760.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold10050020770.1 | Alkaloid | SGD | low | borderline |
| Jnigscaffold11270028260.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold12930034320.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold16020046920.1 | Alkaloid | SGD | low | borderline |
| Jnigscaffold16970050320.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold17330052440.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold19490059770.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold23940079390.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold24920083850.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold27720101120.2 | Alkaloid | SGD | medium | pass |
| Jnigscaffold2970110520.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold32640124420.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold32640124440.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold32660124930.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold34340130720.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold3700140840.2 | Alkaloid | SGD | medium | pass |
| Jnigscaffold37500142060.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold3770142470.1 | Alkaloid | SGD | low | borderline |
| Jnigscaffold43360161650.2 | Alkaloid | SGD | medium | pass |
| Jnigscaffold44190162990.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold45620167400.1 | Alkaloid | SGD | low | borderline |
| Jnigscaffold47460173360.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold55180195700.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold57320201380.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold58170204040.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold61460210420.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold68840227050.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold68840227180.1 | Alkaloid | SGD | medium | pass |
| Jnigscaffold91620278800.1 | Alkaloid | SGD | low | borderline |
| JnigC5402810006310.1 | Alkaloid | SLS | medium | borderline |
| JnigC5418530008470.1 | Alkaloid | SLS | medium | borderline |
| JnigC5418570008510.1 | Alkaloid | SLS | medium | borderline |
| JnigC5418570008520.1 | Alkaloid | SLS | medium | borderline |
| JnigC5418570008540.1 | Alkaloid | SLS | medium | borderline |
| JnigC5418570008560.1 | Alkaloid | SLS | medium | borderline |
| JnigC5418570008570.1 | Alkaloid | SLS | medium | borderline |
| JnigC5444010016810.1 | Alkaloid | SLS | medium | borderline |
| Jnigscaffold10300022120.1 | Alkaloid | SLS | low | borderline |
| Jnigscaffold13030034450.1 | Alkaloid | SLS | medium | borderline |