PlantSME Plant secondary metabolism enzyme database

Juglans nigra (juglans_nigra)

Imported from atlas release summary for Juglans nigra.

1793
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 494 19 BAHD (179) View species results
Phenylpropanoid pathway 393 11 POD (147) View species results
Alkaloid pathway 383 23 7DLGT (71) View species results
Flavonoid pathway 245 10 UFGT (152) View species results
Rosmarinic acid pathway 166 7 C4H (68) View species results
Steroid pathway 112 12 CAS (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1742 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 315 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Jnigscaffold85190264800.1 Flavonoid 4CL medium pass
Jnigscaffold91370277470.1 Flavonoid 4CL low borderline
Jnigscaffold91640278890.1 Flavonoid 4CL medium pass
Jnigscaffold91750279920.1 Flavonoid 4CL medium pass
Jnigscaffold9480280850.1 Flavonoid 4CL low borderline
Jnigscaffold990282860.1 Flavonoid 4CL medium pass
JnigC5413970007940.2 Flavonoid ANR low borderline
JnigC5437670012860.1 Flavonoid ANR low borderline
Jnigscaffold11870029700.1 Flavonoid ANR medium borderline
Jnigscaffold15000042790.1 Flavonoid ANR medium borderline
Jnigscaffold21510067360.1 Flavonoid ANR low borderline
Jnigscaffold22330070330.1 Flavonoid ANR medium borderline
Jnigscaffold24490081730.1 Flavonoid ANR medium borderline
Jnigscaffold26490092010.1 Flavonoid ANR medium borderline
Jnigscaffold26890093870.1 Flavonoid ANR medium borderline
Jnigscaffold27010094460.1 Flavonoid ANR medium borderline
Jnigscaffold28050103540.1 Flavonoid ANR medium borderline
Jnigscaffold28210104580.1 Flavonoid ANR medium borderline
Jnigscaffold29890112150.1 Flavonoid ANR medium borderline
Jnigscaffold30113060.1 Flavonoid ANR medium borderline
Jnigscaffold31030117470.1 Flavonoid ANR medium borderline
Jnigscaffold33640127850.1 Flavonoid ANR medium borderline
Jnigscaffold34410131200.1 Flavonoid ANR medium borderline
Jnigscaffold34770133000.1 Flavonoid ANR medium borderline
Jnigscaffold38810146330.1 Flavonoid ANR medium borderline
Jnigscaffold42320158460.1 Flavonoid ANR medium borderline
Jnigscaffold61890211690.1 Flavonoid ANR medium borderline
Jnigscaffold64770217920.1 Flavonoid ANR low borderline
Jnigscaffold83310261180.1 Flavonoid ANR medium pass
Jnigscaffold11060026900.1 Flavonoid ANS/LDOX medium borderline
Jnigscaffold33640128150.1 Flavonoid ANS/LDOX medium borderline
Jnigscaffold37650142310.1 Flavonoid ANS/LDOX medium borderline
Jnigscaffold41160153130.1 Flavonoid ANS/LDOX medium borderline
Jnigscaffold42200157880.1 Flavonoid ANS/LDOX medium borderline
Jnigscaffold46780171120.1 Flavonoid ANS/LDOX medium borderline
Jnigscaffold52590187250.1 Flavonoid ANS/LDOX medium borderline
Jnigscaffold5290188410.1 Flavonoid ANS/LDOX medium borderline
Jnigscaffold5340189910.1 Flavonoid ANS/LDOX low borderline
Jnigscaffold54530193820.3 Flavonoid ANS/LDOX low borderline
Jnigscaffold5680200450.1 Flavonoid ANS/LDOX low borderline
Jnigscaffold61890211530.1 Flavonoid ANS/LDOX medium borderline
Jnigscaffold26260091170.1 Flavonoid C4H medium borderline
Jnigscaffold30000113120.1 Flavonoid C4H low borderline
Jnigscaffold32280122960.1 Flavonoid C4H medium borderline
Jnigscaffold44940165090.1 Flavonoid C4H low borderline
Jnigscaffold48320176880.1 Flavonoid C4H medium borderline
Jnigscaffold5400192350.1 Flavonoid C4H low borderline
Jnigscaffold60700209210.1 Flavonoid C4H medium borderline
Jnigscaffold64310217250.1 Flavonoid C4H low borderline
Jnigscaffold26600092640.1 Flavonoid CHI medium pass