PlantSME Plant secondary metabolism enzyme database

Juglans nigra (juglans_nigra)

Imported from atlas release summary for Juglans nigra.

2125
Candidate Protein Records
1793
Pathway-Level Records
4519
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 494 19 BAHD (179) View species results
Phenylpropanoid pathway 393 11 POD (147) View species results
Alkaloid pathway 383 23 7DLGT (71) View species results
Flavonoid pathway 245 10 UFGT (152) View species results
Rosmarinic acid pathway 166 7 C4H (68) View species results
Steroid pathway 112 12 CAS (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1742 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 315 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Jnigscaffold2330075570.1 Alkaloid T16H medium borderline
Jnigscaffold24130080370.2 Alkaloid T16H medium borderline
Jnigscaffold25880088950.1 Alkaloid T16H medium borderline
Jnigscaffold26260091170.1 Alkaloid T16H medium borderline
Jnigscaffold26440091990.1 Alkaloid T16H low borderline
Jnigscaffold32280122960.1 Alkaloid T16H medium borderline
Jnigscaffold32370123210.1 Alkaloid T16H medium borderline
Jnigscaffold33410126570.1 Alkaloid T16H medium borderline
Jnigscaffold34530131500.2 Alkaloid T16H medium borderline
Jnigscaffold36580138580.1 Alkaloid T16H medium borderline
Jnigscaffold36870140070.1 Alkaloid T16H low borderline
Jnigscaffold37190141120.1 Alkaloid T16H medium borderline
Jnigscaffold39810149250.1 Alkaloid T16H medium borderline
Jnigscaffold44360163510.1 Alkaloid T16H medium borderline
Jnigscaffold45530167140.1 Alkaloid T16H medium borderline
Jnigscaffold45680167580.1 Alkaloid T16H medium borderline
Jnigscaffold46140169060.1 Alkaloid T16H medium borderline
Jnigscaffold48600178020.1 Alkaloid T16H medium borderline
Jnigscaffold5240186150.1 Alkaloid T16H medium borderline
Jnigscaffold52890188400.1 Alkaloid T16H low borderline
Jnigscaffold5400192410.1 Alkaloid T16H medium borderline
Jnigscaffold56600199610.1 Alkaloid T16H low borderline
Jnigscaffold5680200140.1 Alkaloid T16H medium borderline
Jnigscaffold5900206220.1 Alkaloid T16H medium borderline
Jnigscaffold60700209210.1 Alkaloid T16H medium borderline
Jnigscaffold64310217240.1 Alkaloid T16H medium borderline
Jnigscaffold65010218690.1 Alkaloid T16H medium borderline
Jnigscaffold65210219810.1 Alkaloid T16H medium borderline
Jnigscaffold6730224400.1 Alkaloid T16H medium borderline
Jnigscaffold72160236920.2 Alkaloid T16H low borderline
Jnigscaffold86540266930.1 Alkaloid T16H low borderline
JnigC5334250002280.1 Alkaloid T3O medium borderline
JnigC5389550004970.1 Alkaloid T3O medium borderline
JnigC5397690005670.1 Alkaloid T3O medium borderline
JnigC5417710008360.2 Alkaloid T3O medium borderline
JnigC5423130009280.2 Alkaloid T3O medium borderline
JnigC5433190011300.1 Alkaloid T3O medium borderline
JnigC5433690011560.1 Alkaloid T3O medium pass
JnigC5437970013270.1 Alkaloid T3O low borderline
JnigC5439850013820.1 Alkaloid T3O medium pass
JnigC5441690014730.1 Alkaloid T3O low borderline
JnigC5442890015920.1 Alkaloid T3O medium pass
JnigC5443910016220.1 Alkaloid T3O low borderline
JnigC5443910016310.1 Alkaloid T3O medium borderline
Jnigscaffold10070021490.1 Alkaloid T3O low borderline
Jnigscaffold10330022860.1 Alkaloid T3O medium borderline
Jnigscaffold10520023420.2 Alkaloid T3O medium borderline
Jnigscaffold11710029320.1 Alkaloid T3O low borderline
Jnigscaffold12310031400.1 Alkaloid T3O medium borderline
Jnigscaffold1250032560.1 Alkaloid T3O medium borderline