PlantSME Plant secondary metabolism enzyme database

Juglans nigra (juglans_nigra)

Imported from atlas release summary for Juglans nigra.

2125
Candidate Protein Records
1793
Pathway-Level Records
4519
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 27.55% Phenylpropanoid pathway 21.92% Alkaloid pathway 21.36% Flavonoid pathway 13.66% Rosmarinic acid pathway 9.26% Steroid pathway 6.25%
Family Distribution
C4H 6.28% C3'H/CYP98A 5.97% BAHD 5.18% IFS 4.34% CYP76 4.01% UGT 3.98% 4CL 3.72% UFGT 3.63%
Other Families 62.89%
More Families (97)
7DLGT 163 3.61% POD 156 3.45% T3O 155 3.43% F3H 132 2.92% DWF4/CYP90B1 96 2.12% BR6OX2/CYP85A2 90 1.99% CODM/T6ODM 84 1.86% STR 80 1.77% F3'H/CYP75B 75 1.66% CAD 75 1.66% NMT 70 1.55% H6H 68 1.5% SMT1/SMT2/SMT3 63 1.39% CYP71 61 1.35% COMT 60 1.33% CAS 60 1.33% TRI/TRII 57 1.26% LAC 55 1.22% HCT 52 1.15% PYKS 51 1.13% CYP90D1 47 1.04% TPS 44 0.97% GS 42 0.93% GES 42 0.93% IO 41 0.91% T16H 39 0.86% 16OMT 37 0.82% CSE 37 0.82% G8O/G8H 36 0.8% FNS 36 0.8% BBE 34 0.75% TAT 34 0.75% SGD 30 0.66% RAS 29 0.64% PMT 28 0.62% LAMT 27 0.6% IFR 27 0.6% F5H/CYP84A 26 0.58% 7DLH 25 0.55% CPD/CYP90A1 24 0.53% NCS 23 0.51% ANR 23 0.51% SLS 22 0.49% BR6OX1/CYP85A1 22 0.49% COR 20 0.44% CHS 19 0.42% CCR 19 0.42% PAL 18 0.4% F3'5'H/CYP75A 18 0.4% CPR 16 0.35% CNMT 14 0.31% 8HGO 12 0.27% ANS/LDOX 12 0.27% SQE 12 0.27% DFR 11 0.24% CCoAOMT 11 0.24% ROT3/CYP90C1 11 0.24% GGPPS 10 0.22% TYDC_DDC 9 0.2% MPO 8 0.18% ISY 8 0.18% CYP51G1 8 0.18% FPPS 8 0.18% 6OMT_4OMT_SOMT 7 0.15% CYP80B1 7 0.15% MVK 7 0.15% MVD 7 0.15% AACT 7 0.15% CYP719 6 0.13% HPPR 6 0.13% DET2 6 0.13% DXS 6 0.13% SQS/FDFT1 5 0.11% CHI 4 0.09% SMO1/SMO2 4 0.09% DWF7 4 0.09% HMGR 4 0.09% TDC 3 0.07% ODC 3 0.07% FLS 3 0.07% CPI1 3 0.07% HMGS 3 0.07% CYP80F1 2 0.04% ADC 2 0.04% HYD1 2 0.04% FK 2 0.04% CMK/IspE 2 0.04% PMK 2 0.04% IDI 2 0.04% DXR 2 0.04% HDR/IspH 2 0.04% MDS/IspF 2 0.04% XMT_MXMT_DXMT 1 0.02% DWF5 1 0.02% DWF1 1 0.02% HDS/IspG 1 0.02% MCT/IspD 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 494 19 BAHD (179) View species results
Phenylpropanoid pathway 393 11 POD (147) View species results
Alkaloid pathway 383 23 7DLGT (71) View species results
Flavonoid pathway 245 10 UFGT (152) View species results
Rosmarinic acid pathway 166 7 C4H (68) View species results
Steroid pathway 112 12 CAS (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1742 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 315 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Jnigscaffold41910157010.1 Alkaloid TYDC_DDC medium borderline
Jnigscaffold6390215710.1 Alkaloid TYDC_DDC low borderline
Jnigscaffold72070235790.1 Alkaloid TYDC_DDC medium borderline
Jnigscaffold72160236810.1 Alkaloid TYDC_DDC medium borderline
Jnigscaffold90970276350.1 Alkaloid TYDC_DDC medium borderline
Jnigscaffold14490041200.1 Alkaloid XMT_MXMT_DXMT medium borderline