PlantSME Plant secondary metabolism enzyme database

Leptotheca gaudichaudii (leptotheca_gaudichaudii)

Imported from atlas release summary for Leptotheca gaudichaudii.

657
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 24.35% Terpenoid pathway 22.98% Alkaloid pathway 22.53% Flavonoid pathway 12.94% Rosmarinic acid pathway 10.81% Steroid pathway 6.39%
Family Distribution
C4H 6.73% 4CL 6.14% C3'H/CYP98A 5.87% BAHD 5.38% POD 4.47% CYP76 4.2% IFS 3.39% NMT 3.12%
Other Families 60.71%
More Families (96)
GS 52 2.8% BR6OX2/CYP85A2 51 2.74% STR 48 2.58% T3O 45 2.42% F3H 45 2.42% IFR 44 2.37% DWF4/CYP90B1 41 2.21% F3'H/CYP75B 38 2.05% PAL 33 1.78% UGT 33 1.78% UFGT 32 1.72% 7DLGT 31 1.67% PYKS 29 1.56% TRI/TRII 27 1.45% CAD 27 1.45% SMT1/SMT2/SMT3 26 1.4% IO 22 1.18% CODM/T6ODM 21 1.13% H6H 21 1.13% CYP71 20 1.08% CHS 19 1.02% SLS 17 0.91% CNMT 15 0.81% CAS 15 0.81% NCS 14 0.75% T16H 13 0.7% CPD/CYP90A1 13 0.7% 7DLH 12 0.65% FNS 12 0.65% F3'5'H/CYP75A 12 0.65% HCT 12 0.65% COMT 12 0.65% CYP90D1 12 0.65% CSE 11 0.59% LAC 10 0.54% BBE 9 0.48% COR 9 0.48% 16OMT 9 0.48% ANR 9 0.48% RAS 9 0.48% BR6OX1/CYP85A1 9 0.48% CYP719 8 0.43% G8O/G8H 8 0.43% 8HGO 7 0.38% PMT 7 0.38% SGD 7 0.38% CPR 7 0.38% AACT 7 0.38% CCR 6 0.32% TAT 6 0.32% SQS/FDFT1 6 0.32% GGPPS 6 0.32% LAMT 5 0.27% TDC 5 0.27% DWF5 5 0.27% SQE 5 0.27% CYP80F1 4 0.22% CYP80B1 4 0.22% MPO 4 0.22% CHI 4 0.22% DFR 4 0.22% F5H/CYP84A 4 0.22% DET2 4 0.22% MCT/IspD 4 0.22% GES 3 0.16% TYDC_DDC 3 0.16% ROT3/CYP90C1 3 0.16% MVK 3 0.16% DXR 3 0.16% TPS 3 0.16% HMGR 3 0.16% FPPS 3 0.16% MVD 3 0.16% 6OMT_4OMT_SOMT 2 0.11% FLS 2 0.11% ANS/LDOX 2 0.11% CCoAOMT 2 0.11% CYP51G1 2 0.11% HYD1 2 0.11% SMO1/SMO2 2 0.11% CPI1 2 0.11% DXS 2 0.11% HDR/IspH 2 0.11% MDS/IspF 2 0.11% HDS/IspG 2 0.11% ODC 1 0.05% ISY 1 0.05% ADC 1 0.05% HPPR 1 0.05% FK 1 0.05% DWF7 1 0.05% DWF1 1 0.05% IDI 1 0.05% CMK/IspE 1 0.05% HMGS 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 160 11 POD (79) View species results
Terpenoid pathway 151 19 BAHD (65) View species results
Alkaloid pathway 148 20 NMT (28) View species results
Flavonoid pathway 85 9 UFGT (26) View species results
Rosmarinic acid pathway 71 7 C4H (29) View species results
Steroid pathway 42 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 713 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 121 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
Lgau2190870186380 Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Lgau2192450191600 Rosmarinic Acid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Lgau2192750192430 Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Lgau2196800201140 Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Lgau2197020202260 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Lgau2197020202270 Rosmarinic Acid 4CL low borderline 4CL__00013__sp_Q84P23_4CLL9_ARATH
Lgau2197220203330 Rosmarinic Acid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Lgau2197640205370 Rosmarinic Acid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
Lgau2203190222670 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Lgau2207560238280 Rosmarinic Acid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
Lgau2207810240000 Rosmarinic Acid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
Lgau2208490242860 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Lgau2209360245500 Rosmarinic Acid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
Lgau2212190256570 Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH