PlantSME Plant secondary metabolism enzyme database

Leptotheca gaudichaudii (leptotheca_gaudichaudii)

Imported from atlas release summary for Leptotheca gaudichaudii.

982
Candidate Protein Records
657
Pathway-Level Records
1858
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Phenylpropanoid pathway 24.35% Terpenoid pathway 22.98% Alkaloid pathway 22.53% Flavonoid pathway 12.94% Rosmarinic acid pathway 10.81% Steroid pathway 6.39%
Family Distribution
C4H 6.73% 4CL 6.14% C3'H/CYP98A 5.87% BAHD 5.38% POD 4.47% CYP76 4.2% IFS 3.39% NMT 3.12%
Other Families 60.71%
More Families (96)
GS 52 2.8% BR6OX2/CYP85A2 51 2.74% STR 48 2.58% T3O 45 2.42% F3H 45 2.42% IFR 44 2.37% DWF4/CYP90B1 41 2.21% F3'H/CYP75B 38 2.05% PAL 33 1.78% UGT 33 1.78% UFGT 32 1.72% 7DLGT 31 1.67% PYKS 29 1.56% TRI/TRII 27 1.45% CAD 27 1.45% SMT1/SMT2/SMT3 26 1.4% IO 22 1.18% CODM/T6ODM 21 1.13% H6H 21 1.13% CYP71 20 1.08% CHS 19 1.02% SLS 17 0.91% CNMT 15 0.81% CAS 15 0.81% NCS 14 0.75% T16H 13 0.7% CPD/CYP90A1 13 0.7% 7DLH 12 0.65% FNS 12 0.65% F3'5'H/CYP75A 12 0.65% HCT 12 0.65% COMT 12 0.65% CYP90D1 12 0.65% CSE 11 0.59% LAC 10 0.54% BBE 9 0.48% COR 9 0.48% 16OMT 9 0.48% ANR 9 0.48% RAS 9 0.48% BR6OX1/CYP85A1 9 0.48% CYP719 8 0.43% G8O/G8H 8 0.43% 8HGO 7 0.38% PMT 7 0.38% SGD 7 0.38% CPR 7 0.38% AACT 7 0.38% CCR 6 0.32% TAT 6 0.32% SQS/FDFT1 6 0.32% GGPPS 6 0.32% LAMT 5 0.27% TDC 5 0.27% DWF5 5 0.27% SQE 5 0.27% CYP80F1 4 0.22% CYP80B1 4 0.22% MPO 4 0.22% CHI 4 0.22% DFR 4 0.22% F5H/CYP84A 4 0.22% DET2 4 0.22% MCT/IspD 4 0.22% GES 3 0.16% TYDC_DDC 3 0.16% ROT3/CYP90C1 3 0.16% MVK 3 0.16% DXR 3 0.16% TPS 3 0.16% HMGR 3 0.16% FPPS 3 0.16% MVD 3 0.16% 6OMT_4OMT_SOMT 2 0.11% FLS 2 0.11% ANS/LDOX 2 0.11% CCoAOMT 2 0.11% CYP51G1 2 0.11% HYD1 2 0.11% SMO1/SMO2 2 0.11% CPI1 2 0.11% DXS 2 0.11% HDR/IspH 2 0.11% MDS/IspF 2 0.11% HDS/IspG 2 0.11% ODC 1 0.05% ISY 1 0.05% ADC 1 0.05% HPPR 1 0.05% FK 1 0.05% DWF7 1 0.05% DWF1 1 0.05% IDI 1 0.05% CMK/IspE 1 0.05% HMGS 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 160 11 POD (79) View species results
Terpenoid pathway 151 19 BAHD (65) View species results
Alkaloid pathway 148 20 NMT (28) View species results
Flavonoid pathway 85 9 UFGT (26) View species results
Rosmarinic acid pathway 71 7 C4H (29) View species results
Steroid pathway 42 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 713 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 121 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Lgau1349390000170 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
Lgau1391270003540 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Lgau1641990035900 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Lgau1884080050230 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Lgau2081870083800 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
Lgau2081870083820 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Lgau2123050102320 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Lgau2164950135300 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Lgau2175180151940 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Lgau2189480180270 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Lgau2191080187450 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
Lgau2192610192150 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Lgau2197430204320 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
Lgau2203330223490 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
Lgau2213200261350 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL