PlantSME Plant secondary metabolism enzyme database

Leptotheca gaudichaudii (leptotheca_gaudichaudii)

Imported from atlas release summary for Leptotheca gaudichaudii.

657
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 24.35% Terpenoid pathway 22.98% Alkaloid pathway 22.53% Flavonoid pathway 12.94% Rosmarinic acid pathway 10.81% Steroid pathway 6.39%
Family Distribution
C4H 6.73% 4CL 6.14% C3'H/CYP98A 5.87% BAHD 5.38% POD 4.47% CYP76 4.2% IFS 3.39% NMT 3.12%
Other Families 60.71%
More Families (96)
GS 52 2.8% BR6OX2/CYP85A2 51 2.74% STR 48 2.58% T3O 45 2.42% F3H 45 2.42% IFR 44 2.37% DWF4/CYP90B1 41 2.21% F3'H/CYP75B 38 2.05% PAL 33 1.78% UGT 33 1.78% UFGT 32 1.72% 7DLGT 31 1.67% PYKS 29 1.56% TRI/TRII 27 1.45% CAD 27 1.45% SMT1/SMT2/SMT3 26 1.4% IO 22 1.18% CODM/T6ODM 21 1.13% H6H 21 1.13% CYP71 20 1.08% CHS 19 1.02% SLS 17 0.91% CNMT 15 0.81% CAS 15 0.81% NCS 14 0.75% T16H 13 0.7% CPD/CYP90A1 13 0.7% 7DLH 12 0.65% FNS 12 0.65% F3'5'H/CYP75A 12 0.65% HCT 12 0.65% COMT 12 0.65% CYP90D1 12 0.65% CSE 11 0.59% LAC 10 0.54% BBE 9 0.48% COR 9 0.48% 16OMT 9 0.48% ANR 9 0.48% RAS 9 0.48% BR6OX1/CYP85A1 9 0.48% CYP719 8 0.43% G8O/G8H 8 0.43% 8HGO 7 0.38% PMT 7 0.38% SGD 7 0.38% CPR 7 0.38% AACT 7 0.38% CCR 6 0.32% TAT 6 0.32% SQS/FDFT1 6 0.32% GGPPS 6 0.32% LAMT 5 0.27% TDC 5 0.27% DWF5 5 0.27% SQE 5 0.27% CYP80F1 4 0.22% CYP80B1 4 0.22% MPO 4 0.22% CHI 4 0.22% DFR 4 0.22% F5H/CYP84A 4 0.22% DET2 4 0.22% MCT/IspD 4 0.22% GES 3 0.16% TYDC_DDC 3 0.16% ROT3/CYP90C1 3 0.16% MVK 3 0.16% DXR 3 0.16% TPS 3 0.16% HMGR 3 0.16% FPPS 3 0.16% MVD 3 0.16% 6OMT_4OMT_SOMT 2 0.11% FLS 2 0.11% ANS/LDOX 2 0.11% CCoAOMT 2 0.11% CYP51G1 2 0.11% HYD1 2 0.11% SMO1/SMO2 2 0.11% CPI1 2 0.11% DXS 2 0.11% HDR/IspH 2 0.11% MDS/IspF 2 0.11% HDS/IspG 2 0.11% ODC 1 0.05% ISY 1 0.05% ADC 1 0.05% HPPR 1 0.05% FK 1 0.05% DWF7 1 0.05% DWF1 1 0.05% IDI 1 0.05% CMK/IspE 1 0.05% HMGS 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 160 11 POD (79) View species results
Terpenoid pathway 151 19 BAHD (65) View species results
Alkaloid pathway 148 20 NMT (28) View species results
Flavonoid pathway 85 9 UFGT (26) View species results
Rosmarinic acid pathway 71 7 C4H (29) View species results
Steroid pathway 42 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 713 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 121 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
Reset
Gene Pathway Family Confidence Status
Lgau1891170053620 Alkaloid NCS medium borderline
Lgau195740059850 Alkaloid NCS medium borderline
Lgau203470076800 Alkaloid NCS low borderline
Lgau2127350104410 Alkaloid NCS medium borderline
Lgau2144680117470 Alkaloid NCS low borderline
Lgau2156710124430 Alkaloid NCS low borderline
Lgau2198890209810 Alkaloid NCS low borderline
Lgau2202280219900 Alkaloid NCS low borderline
Lgau2202280219910 Alkaloid NCS low borderline
Lgau2205740231100 Alkaloid NCS medium borderline
Lgau2208380242330 Alkaloid NCS medium borderline
Lgau2213620262730 Alkaloid NCS medium borderline
Lgau2218970278840 Alkaloid NCS low borderline
Lgau2218970278860 Alkaloid NCS medium borderline