PlantSME Plant secondary metabolism enzyme database

Lotus japonicus (lotus_japonicus)

Imported from atlas release summary for Lotus japonicus.

1586
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.87% Alkaloid pathway 21.88% Phenylpropanoid pathway 20.3% Flavonoid pathway 15.57% Rosmarinic acid pathway 8.58% Steroid pathway 5.8%
Family Distribution
C4H 6.1% C3'H/CYP98A 6.05% BAHD 5.12% UFGT 4.28% UGT 4.28% 7DLGT 4.18% T3O 3.79% CYP76 3.76%
Other Families 62.44%
More Families (96)
IFS 149 3.66% F3H 138 3.39% POD 133 3.27% 4CL 129 3.17% F3'H/CYP75B 87 2.14% DWF4/CYP90B1 87 2.14% NMT 86 2.12% CODM/T6ODM 83 2.04% BR6OX2/CYP85A2 71 1.75% STR 66 1.62% H6H 61 1.5% CYP71 58 1.43% CAD 57 1.4% SMT1/SMT2/SMT3 52 1.28% CAS 47 1.16% COMT 46 1.13% HCT 46 1.13% CSE 44 1.08% RAS 43 1.06% SGD 41 1.01% CYP90D1 40 0.98% PYKS 39 0.96% LAC 39 0.96% G8O/G8H 35 0.86% IFR 34 0.84% PAL 33 0.81% 16OMT 32 0.79% TRI/TRII 32 0.79% ANR 32 0.79% T16H 29 0.71% F3'5'H/CYP75A 29 0.71% COR 28 0.69% GES 27 0.66% F5H/CYP84A 27 0.66% TPS 27 0.66% GS 25 0.61% CPD/CYP90A1 25 0.61% PMT 24 0.59% BR6OX1/CYP85A1 24 0.59% 7DLH 23 0.57% CCR 22 0.54% BBE 20 0.49% LAMT 20 0.49% CHS 19 0.47% IO 18 0.44% NCS 17 0.42% 8HGO 16 0.39% SLS 16 0.39% TAT 15 0.37% ROT3/CYP90C1 15 0.37% CNMT 14 0.34% ANS/LDOX 14 0.34% FNS 12 0.3% CPR 10 0.25% CYP51G1 10 0.25% TDC 9 0.22% CCoAOMT 9 0.22% SQE 9 0.22% MPO 8 0.2% CYP719 8 0.2% DFR 8 0.2% AACT 8 0.2% CHI 7 0.17% HPPR 7 0.17% DET2 7 0.17% MVK 7 0.17% DXS 7 0.17% DWF1 6 0.15% GGPPS 6 0.15% SQS/FDFT1 5 0.12% FPPS 5 0.12% ISY 4 0.1% CYP80B1 4 0.1% MVD 4 0.1% 6OMT_4OMT_SOMT 3 0.07% TYDC_DDC 3 0.07% SMO1/SMO2 3 0.07% IDI 3 0.07% HMGS 3 0.07% HMGR 3 0.07% MCT/IspD 3 0.07% HDR/IspH 3 0.07% ADC 2 0.05% CYP80F1 2 0.05% DWF5 2 0.05% CMK/IspE 2 0.05% PMK 2 0.05% HDS/IspG 2 0.05% DXR 2 0.05% ODC 1 0.02% XMT_MXMT_DXMT 1 0.02% CPI1 1 0.02% HYD1 1 0.02% DWF7 1 0.02% FK 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 442 19 BAHD (174) View species results
Alkaloid pathway 347 19 7DLGT (67) View species results
Phenylpropanoid pathway 322 12 POD (128) View species results
Flavonoid pathway 247 8 UFGT (165) View species results
Rosmarinic acid pathway 136 7 C4H (54) View species results
Steroid pathway 92 13 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1558 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 297 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
LOTjap01G0013450.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
LOTjap01G0019030.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
LOTjap01G0029290.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
LOTjap01G0045590.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
LOTjap01G0050930.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
LOTjap01G0060390.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
LOTjap02G0019590.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
LOTjap03G0001870.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
LOTjap03G0024480.1 Alkaloid NCS medium pass NCS__00005__sp_Q67A25_NCS_THLFG
LOTjap03G0024490.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
LOTjap03G0030990.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
LOTjap03G0045760.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
LOTjap04G0002210.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
LOTjap04G0012880.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
LOTjap04G0025830.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
LOTjap06G0009850.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
LOTjap06G0022790.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO