Lotus japonicus (lotus_japonicus)
Imported from atlas release summary for Lotus japonicus.
1586
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1586
Candidate Genes
C4H
6.1%
C3'H/CYP98A
6.05%
BAHD
5.12%
UFGT
4.28%
UGT
4.28%
7DLGT
4.18%
T3O
3.79%
CYP76
3.76%
Other Families
62.44%
More Families (96)
IFS
149
3.66%
F3H
138
3.39%
POD
133
3.27%
4CL
129
3.17%
F3'H/CYP75B
87
2.14%
DWF4/CYP90B1
87
2.14%
NMT
86
2.12%
CODM/T6ODM
83
2.04%
BR6OX2/CYP85A2
71
1.75%
STR
66
1.62%
H6H
61
1.5%
CYP71
58
1.43%
CAD
57
1.4%
SMT1/SMT2/SMT3
52
1.28%
CAS
47
1.16%
COMT
46
1.13%
HCT
46
1.13%
CSE
44
1.08%
RAS
43
1.06%
SGD
41
1.01%
CYP90D1
40
0.98%
PYKS
39
0.96%
LAC
39
0.96%
G8O/G8H
35
0.86%
IFR
34
0.84%
PAL
33
0.81%
16OMT
32
0.79%
TRI/TRII
32
0.79%
ANR
32
0.79%
T16H
29
0.71%
F3'5'H/CYP75A
29
0.71%
COR
28
0.69%
GES
27
0.66%
F5H/CYP84A
27
0.66%
TPS
27
0.66%
GS
25
0.61%
CPD/CYP90A1
25
0.61%
PMT
24
0.59%
BR6OX1/CYP85A1
24
0.59%
7DLH
23
0.57%
CCR
22
0.54%
BBE
20
0.49%
LAMT
20
0.49%
CHS
19
0.47%
IO
18
0.44%
NCS
17
0.42%
8HGO
16
0.39%
SLS
16
0.39%
TAT
15
0.37%
ROT3/CYP90C1
15
0.37%
CNMT
14
0.34%
ANS/LDOX
14
0.34%
FNS
12
0.3%
CPR
10
0.25%
CYP51G1
10
0.25%
TDC
9
0.22%
CCoAOMT
9
0.22%
SQE
9
0.22%
MPO
8
0.2%
CYP719
8
0.2%
DFR
8
0.2%
AACT
8
0.2%
CHI
7
0.17%
HPPR
7
0.17%
DET2
7
0.17%
MVK
7
0.17%
DXS
7
0.17%
DWF1
6
0.15%
GGPPS
6
0.15%
SQS/FDFT1
5
0.12%
FPPS
5
0.12%
ISY
4
0.1%
CYP80B1
4
0.1%
MVD
4
0.1%
6OMT_4OMT_SOMT
3
0.07%
TYDC_DDC
3
0.07%
SMO1/SMO2
3
0.07%
IDI
3
0.07%
HMGS
3
0.07%
HMGR
3
0.07%
MCT/IspD
3
0.07%
HDR/IspH
3
0.07%
ADC
2
0.05%
CYP80F1
2
0.05%
DWF5
2
0.05%
CMK/IspE
2
0.05%
PMK
2
0.05%
HDS/IspG
2
0.05%
DXR
2
0.05%
ODC
1
0.02%
XMT_MXMT_DXMT
1
0.02%
CPI1
1
0.02%
HYD1
1
0.02%
DWF7
1
0.02%
FK
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 442 | 19 | BAHD (174) | View species results |
| Alkaloid pathway | 347 | 19 | 7DLGT (67) | View species results |
| Phenylpropanoid pathway | 322 | 12 | POD (128) | View species results |
| Flavonoid pathway | 247 | 8 | UFGT (165) | View species results |
| Rosmarinic acid pathway | 136 | 7 | C4H (54) | View species results |
| Steroid pathway | 92 | 13 | CAS (37) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1558 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 297 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| LOTjap01G0002340.1 | Alkaloid | PMT | medium | pass |
| LOTjap01G0004720.1 | Alkaloid | PMT | medium | pass |
| LOTjap01G0017400.1 | Alkaloid | PMT | medium | pass |
| LOTjap01G0040030.1 | Alkaloid | PMT | medium | borderline |
| LOTjap01G0043350.1 | Alkaloid | PMT | medium | pass |
| LOTjap01G0048670.1 | Alkaloid | PMT | medium | borderline |
| LOTjap02G0009840.1 | Alkaloid | PMT | medium | borderline |
| LOTjap02G0019040.1 | Alkaloid | PMT | low | borderline |
| LOTjap02G0019070.1 | Alkaloid | PMT | low | borderline |
| LOTjap02G0024390.1 | Alkaloid | PMT | low | borderline |
| LOTjap03G0022280.1 | Alkaloid | PMT | low | borderline |
| LOTjap03G0031210.1 | Alkaloid | PMT | medium | pass |
| LOTjap03G0052690.1 | Alkaloid | PMT | low | borderline |
| LOTjap04G0022510.1 | Alkaloid | PMT | medium | borderline |
| LOTjap04G0022520.1 | Alkaloid | PMT | medium | borderline |
| LOTjap04G0028240.1 | Alkaloid | PMT | medium | borderline |
| LOTjap05G0005160.1 | Alkaloid | PMT | medium | pass |
| LOTjap05G0015310.1 | Alkaloid | PMT | medium | pass |
| LOTjap05G0029660.1 | Alkaloid | PMT | medium | borderline |
| LOTjap05G0032700.1 | Alkaloid | PMT | low | borderline |
| LOTjap06G0003790.1 | Alkaloid | PMT | medium | pass |
| LOTjap06G0010080.1 | Alkaloid | PMT | low | borderline |
| LOTjap06G0010140.1 | Alkaloid | PMT | low | borderline |
| LOTjapContig001550008150.1 | Alkaloid | PMT | medium | pass |