PlantSME Plant secondary metabolism enzyme database

Mesembryanthemum crystallinum (mesembryanthemum_crystallinum)

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Imported from atlas release summary for Mesembryanthemum crystallinum.

1078
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.78% Alkaloid pathway 23.01% Phenylpropanoid pathway 21.43% Flavonoid pathway 12.06% Rosmarinic acid pathway 7.88% Steroid pathway 5.84%
Family Distribution
BAHD 6.24% C4H 5.54% C3'H/CYP98A 5.34% POD 4.33% UGT 3.94% UFGT 3.63% IFS 3.63% 7DLGT 3.59%
Other Families 63.77%
More Families (95)
4CL 84 3.28% CYP76 81 3.16% F3H 74 2.89% T3O 72 2.81% NMT 64 2.5% DWF4/CYP90B1 57 2.22% CODM/T6ODM 46 1.79% TRI/TRII 45 1.76% F3'H/CYP75B 43 1.68% STR 42 1.64% BR6OX2/CYP85A2 39 1.52% HCT 35 1.37% TPS 35 1.37% GES 34 1.33% CAD 34 1.33% SMT1/SMT2/SMT3 34 1.33% H6H 33 1.29% CSE 32 1.25% CYP71 32 1.25% RAS 29 1.13% PYKS 28 1.09% SGD 27 1.05% CAS 26 1.01% IFR 25 0.98% T16H 24 0.94% LAC 24 0.94% G8O/G8H 23 0.9% GS 22 0.86% 7DLH 22 0.86% PMT 22 0.86% BBE 21 0.82% FPPS 20 0.78% ANR 18 0.7% SLS 17 0.66% CNMT 17 0.66% COMT 17 0.66% CYP90D1 17 0.66% COR 15 0.59% CCR 15 0.59% TAT 15 0.59% F3'5'H/CYP75A 13 0.51% CYP51G1 13 0.51% 16OMT 12 0.47% 8HGO 11 0.43% FNS 11 0.43% CPD/CYP90A1 11 0.43% CHS 10 0.39% CCoAOMT 10 0.39% F5H/CYP84A 10 0.39% LAMT 9 0.35% IO 9 0.35% DFR 9 0.35% PAL 9 0.35% BR6OX1/CYP85A1 9 0.35% ROT3/CYP90C1 8 0.31% TYDC_DDC 7 0.27% NCS 7 0.27% CPR 7 0.27% DET2 7 0.27% SQS/FDFT1 7 0.27% HPPR 6 0.23% TDC 5 0.2% MPO 5 0.2% ANS/LDOX 5 0.2% ISY 4 0.16% SQE 4 0.16% FK 4 0.16% GGPPS 4 0.16% AACT 4 0.16% XMT_MXMT_DXMT 3 0.12% CHI 3 0.12% DXS 3 0.12% MVK 3 0.12% MCT/IspD 3 0.12% HMGR 3 0.12% 6OMT_4OMT_SOMT 2 0.08% CYP80B1 2 0.08% FLS 2 0.08% SMO1/SMO2 2 0.08% PMK 2 0.08% MVD 2 0.08% HDR/IspH 2 0.08% ADC 1 0.04% CYP719 1 0.04% DWF7 1 0.04% DWF5 1 0.04% DWF1 1 0.04% HYD1 1 0.04% CPI1 1 0.04% HMGS 1 0.04% MDS/IspF 1 0.04% IDI 1 0.04% CMK/IspE 1 0.04% HDS/IspG 1 0.04% DXR 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 321 19 BAHD (124) View species results
Alkaloid pathway 248 20 7DLGT (40) View species results
Phenylpropanoid pathway 231 11 POD (92) View species results
Flavonoid pathway 130 9 UFGT (86) View species results
Rosmarinic acid pathway 85 7 C4H (27) View species results
Steroid pathway 63 11 SMT1/SMT2/SMT3 (23) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 875 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 224 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHI
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Gene Pathway Family Confidence Status Best Target
mesembryanthemum_crystallinum_Mc01G01358 Flavonoid CHI medium pass CHI__00001__sp_A0A2U7XUE3_CHIL2_HUMLU
mesembryanthemum_crystallinum_Mc07G00764 Flavonoid CHI medium pass CHI__00003__sp_O65333_CFI_ELAUM
mesembryanthemum_crystallinum_Mc07G00768 Flavonoid CHI medium pass CHI__00003__sp_O65333_CFI_ELAUM