Mesembryanthemum crystallinum (mesembryanthemum_crystallinum)
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Imported from atlas release summary for Mesembryanthemum crystallinum.
1078
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1078
Candidate Genes
BAHD
6.24%
C4H
5.54%
C3'H/CYP98A
5.34%
POD
4.33%
UGT
3.94%
UFGT
3.63%
IFS
3.63%
7DLGT
3.59%
Other Families
63.77%
More Families (95)
4CL
84
3.28%
CYP76
81
3.16%
F3H
74
2.89%
T3O
72
2.81%
NMT
64
2.5%
DWF4/CYP90B1
57
2.22%
CODM/T6ODM
46
1.79%
TRI/TRII
45
1.76%
F3'H/CYP75B
43
1.68%
STR
42
1.64%
BR6OX2/CYP85A2
39
1.52%
HCT
35
1.37%
TPS
35
1.37%
GES
34
1.33%
CAD
34
1.33%
SMT1/SMT2/SMT3
34
1.33%
H6H
33
1.29%
CSE
32
1.25%
CYP71
32
1.25%
RAS
29
1.13%
PYKS
28
1.09%
SGD
27
1.05%
CAS
26
1.01%
IFR
25
0.98%
T16H
24
0.94%
LAC
24
0.94%
G8O/G8H
23
0.9%
GS
22
0.86%
7DLH
22
0.86%
PMT
22
0.86%
BBE
21
0.82%
FPPS
20
0.78%
ANR
18
0.7%
SLS
17
0.66%
CNMT
17
0.66%
COMT
17
0.66%
CYP90D1
17
0.66%
COR
15
0.59%
CCR
15
0.59%
TAT
15
0.59%
F3'5'H/CYP75A
13
0.51%
CYP51G1
13
0.51%
16OMT
12
0.47%
8HGO
11
0.43%
FNS
11
0.43%
CPD/CYP90A1
11
0.43%
CHS
10
0.39%
CCoAOMT
10
0.39%
F5H/CYP84A
10
0.39%
LAMT
9
0.35%
IO
9
0.35%
DFR
9
0.35%
PAL
9
0.35%
BR6OX1/CYP85A1
9
0.35%
ROT3/CYP90C1
8
0.31%
TYDC_DDC
7
0.27%
NCS
7
0.27%
CPR
7
0.27%
DET2
7
0.27%
SQS/FDFT1
7
0.27%
HPPR
6
0.23%
TDC
5
0.2%
MPO
5
0.2%
ANS/LDOX
5
0.2%
ISY
4
0.16%
SQE
4
0.16%
FK
4
0.16%
GGPPS
4
0.16%
AACT
4
0.16%
XMT_MXMT_DXMT
3
0.12%
CHI
3
0.12%
DXS
3
0.12%
MVK
3
0.12%
MCT/IspD
3
0.12%
HMGR
3
0.12%
6OMT_4OMT_SOMT
2
0.08%
CYP80B1
2
0.08%
FLS
2
0.08%
SMO1/SMO2
2
0.08%
PMK
2
0.08%
MVD
2
0.08%
HDR/IspH
2
0.08%
ADC
1
0.04%
CYP719
1
0.04%
DWF7
1
0.04%
DWF5
1
0.04%
DWF1
1
0.04%
HYD1
1
0.04%
CPI1
1
0.04%
HMGS
1
0.04%
MDS/IspF
1
0.04%
IDI
1
0.04%
CMK/IspE
1
0.04%
HDS/IspG
1
0.04%
DXR
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 321 | 19 | BAHD (124) | View species results |
| Alkaloid pathway | 248 | 20 | 7DLGT (40) | View species results |
| Phenylpropanoid pathway | 231 | 11 | POD (92) | View species results |
| Flavonoid pathway | 130 | 9 | UFGT (86) | View species results |
| Rosmarinic acid pathway | 85 | 7 | C4H (27) | View species results |
| Steroid pathway | 63 | 11 | SMT1/SMT2/SMT3 (23) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 875 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 224 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| mesembryanthemum_crystallinum_Mc01G00061 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc01G00169 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc01G00172 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc01G01533 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc01G02653 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc01G02665 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc01G02850 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc02G00337 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc02G00425 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| mesembryanthemum_crystallinum_Mc03G00406 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc03G01039 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| mesembryanthemum_crystallinum_Mc03G01978 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc03G02154 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc04G00340 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc04G01301 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc04G02404 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc05G00521 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc05G00975 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc05G01027 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc05G02084 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| mesembryanthemum_crystallinum_Mc05G02556 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc05G02562 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc06G00897 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc06G01152 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc06G01550 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc06G01879 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| mesembryanthemum_crystallinum_Mc06G01880 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| mesembryanthemum_crystallinum_Mc06G01968 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc07G00052 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| mesembryanthemum_crystallinum_Mc07G00645 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc07G00761 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc07G01414 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc07G01569 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc07G02095 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc08G00169 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc08G00981 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc08G00982 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc08G01106 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc08G01885 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc09G01534 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc09G01734 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| mesembryanthemum_crystallinum_Mc09G01785 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |