Nicotiana benthamiana (nicotiana_benthamiana)
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Imported from atlas release summary for Nicotiana benthamiana.
2798
Candidate Protein Records
2130
Pathway-Level Records
5341
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5341
Family-Level Calls
C4H
5.94%
C3'H/CYP98A
5.45%
POD
5.43%
BAHD
5.26%
4CL
4.12%
CYP76
3.48%
IFS
3.24%
UGT
3.18%
Other Families
63.9%
More Families (96)
T3O
163
3.05%
F3H
162
3.03%
7DLGT
150
2.81%
UFGT
145
2.71%
NMT
136
2.55%
DWF4/CYP90B1
132
2.47%
STR
117
2.19%
F3'H/CYP75B
109
2.04%
BR6OX2/CYP85A2
102
1.91%
CODM/T6ODM
96
1.8%
TPS
96
1.8%
H6H
92
1.72%
CYP71
80
1.5%
LAC
79
1.48%
CAD
76
1.42%
GES
69
1.29%
SMT1/SMT2/SMT3
69
1.29%
CSE
66
1.24%
IFR
61
1.14%
CAS
61
1.14%
PAL
54
1.01%
GS
53
0.99%
TRI/TRII
47
0.88%
SGD
46
0.86%
SLS
44
0.82%
T16H
40
0.75%
7DLH
39
0.73%
IO
38
0.71%
G8O/G8H
38
0.71%
F3'5'H/CYP75A
37
0.69%
COMT
37
0.69%
PYKS
35
0.66%
TAT
35
0.66%
NCS
33
0.62%
CYP90D1
33
0.62%
ANR
32
0.6%
CCR
32
0.6%
F5H/CYP84A
31
0.58%
CPD/CYP90A1
31
0.58%
RAS
30
0.56%
FNS
26
0.49%
ANS/LDOX
25
0.47%
BBE
23
0.43%
CYP51G1
23
0.43%
DFR
22
0.41%
HCT
22
0.41%
PMT
20
0.37%
16OMT
19
0.36%
8HGO
19
0.36%
BR6OX1/CYP85A1
19
0.36%
CNMT
18
0.34%
FPPS
18
0.34%
MPO
16
0.3%
HPPR
16
0.3%
SQS/FDFT1
16
0.3%
LAMT
14
0.26%
CCoAOMT
14
0.26%
CPR
14
0.26%
ROT3/CYP90C1
14
0.26%
CYP80B1
13
0.24%
COR
13
0.24%
AACT
13
0.24%
CHS
11
0.21%
DET2
10
0.19%
ISY
9
0.17%
GGPPS
9
0.17%
MVK
9
0.17%
DXS
9
0.17%
TYDC_DDC
8
0.15%
CYP719
8
0.15%
CHI
8
0.15%
SMO1/SMO2
8
0.15%
XMT_MXMT_DXMT
7
0.13%
HMGS
7
0.13%
MVD
7
0.13%
SQE
6
0.11%
HDR/IspH
6
0.11%
6OMT_4OMT_SOMT
5
0.09%
DWF1
5
0.09%
MCT/IspD
5
0.09%
HMGR
5
0.09%
HDS/IspG
5
0.09%
IDI
5
0.09%
ADC
4
0.07%
TDC
4
0.07%
FLS
4
0.07%
HYD1
4
0.07%
DWF7
4
0.07%
FK
3
0.06%
DWF5
3
0.06%
PMK
3
0.06%
ODC
2
0.04%
CPI1
2
0.04%
MDS/IspF
2
0.04%
DXR
2
0.04%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 594 | 19 | BAHD (206) | View species results |
| Phenylpropanoid pathway | 549 | 11 | POD (262) | View species results |
| Alkaloid pathway | 437 | 25 | NMT (68) | View species results |
| Flavonoid pathway | 234 | 12 | UFGT (114) | View species results |
| Rosmarinic acid pathway | 202 | 7 | C4H (75) | View species results |
| Steroid pathway | 114 | 12 | CAS (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1961 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 333 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| nicotiana_benthamiana_Niben261Chr18g1076004.1 | Terpenoid | TPS | medium | pass | TPS__00034__sp_A0A2K9RFZ7_TPS1_VITAC |
| nicotiana_benthamiana_Niben261Chr19g0263002.1 | Terpenoid | TPS | medium | pass | TPS__00118__sp_G8H5N0_TPS17_SOLHA |
| nicotiana_benthamiana_Niben261Chr19g0263003.1 | Terpenoid | TPS | medium | pass | TPS__00115__sp_G5CV52_TPS17_SOLLC |
| nicotiana_benthamiana_Niben261Chr19g0265001.1 | Terpenoid | TPS | medium | pass | TPS__00115__sp_G5CV52_TPS17_SOLLC |
| nicotiana_benthamiana_Niben261Chr19g0331005.1 | Terpenoid | TPS | medium | pass | TPS__00119__sp_G8H5N3_TPS16_SOLLC |
| nicotiana_benthamiana_Niben261Chr19g0338005.1 | Terpenoid | TPS | medium | pass | TPS__00119__sp_G8H5N3_TPS16_SOLLC |
| nicotiana_benthamiana_Niben261Chr19g0338007.1 | Terpenoid | TPS | medium | pass | TPS__00118__sp_G8H5N0_TPS17_SOLHA |
| nicotiana_benthamiana_Niben261Chr19g0338009.1 | Terpenoid | TPS | medium | pass | TPS__00115__sp_G5CV52_TPS17_SOLLC |
| nicotiana_benthamiana_Niben261Chr19g0340002.1 | Terpenoid | TPS | medium | pass | TPS__00115__sp_G5CV52_TPS17_SOLLC |
| nicotiana_benthamiana_Niben261Chr19g1268005.1 | Terpenoid | TPS | medium | pass | TPS__00114__sp_G5CV45_TPS32_SOLLC |
| nicotiana_benthamiana_Niben261Chr19g1269001.1 | Terpenoid | TPS | medium | pass | TPS__00114__sp_G5CV45_TPS32_SOLLC |
| nicotiana_benthamiana_Niben261Chr19g1282001.1 | Terpenoid | TPS | medium | pass | TPS__00114__sp_G5CV45_TPS32_SOLLC |
| nicotiana_benthamiana_Niben261Chr19g1282002.1 | Terpenoid | TPS | medium | pass | TPS__00114__sp_G5CV45_TPS32_SOLLC |
| nicotiana_benthamiana_Niben261Chr19g1336001.1 | Terpenoid | TPS | medium | pass | TPS__00114__sp_G5CV45_TPS32_SOLLC |
| nicotiana_benthamiana_Niben261Chr19g1336006.1 | Terpenoid | TPS | medium | pass | TPS__00114__sp_G5CV45_TPS32_SOLLC |
| nicotiana_benthamiana_Niben261Chr19g1337008.1 | Terpenoid | TPS | medium | pass | TPS__00114__sp_G5CV45_TPS32_SOLLC |
| nicotiana_benthamiana_Niben261Scf00229g0000002.1 | Terpenoid | TPS | medium | pass | TPS__00114__sp_G5CV45_TPS32_SOLLC |
| nicotiana_benthamiana_Niben261Scf13446g0000001.1 | Terpenoid | TPS | medium | pass | TPS__00114__sp_G5CV45_TPS32_SOLLC |
| nicotiana_benthamiana_Niben261Scf14457g0000002.1 | Terpenoid | TPS | medium | pass | TPS__00114__sp_G5CV45_TPS32_SOLLC |
| nicotiana_benthamiana_Niben261Scf15560g0000003.1 | Terpenoid | TPS | medium | pass | TPS__00119__sp_G8H5N3_TPS16_SOLLC |
| nicotiana_benthamiana_Niben261Scf15560g0000004.1 | Terpenoid | TPS | medium | pass | TPS__00051__sp_A0A7G5KLV1_TPS2_CANOD |
| nicotiana_benthamiana_Niben261Chr01g0036011.1 | Terpenoid | UGT | medium | pass | UGT__00105__sp_Q9SK82_U85A1_ARATH |
| nicotiana_benthamiana_Niben261Chr01g0584013.1 | Terpenoid | UGT | medium | pass | UGT__00076__sp_Q8L7M0_TUN_ARATH |
| nicotiana_benthamiana_Niben261Chr01g0648001.1 | Terpenoid | UGT | medium | pass | UGT__00077__sp_Q8VZE9_U73B1_ARATH |
| nicotiana_benthamiana_Niben261Chr01g0650004.1 | Terpenoid | UGT | low | borderline | UGT__00013__sp_A0A172J2D0_UGT2_PUEML |
| nicotiana_benthamiana_Niben261Chr01g0733005.1 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| nicotiana_benthamiana_Niben261Chr01g0804005.1 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| nicotiana_benthamiana_Niben261Chr01g0976002.1 | Terpenoid | UGT | medium | pass | UGT__00117__sp_U5NH37_7DLGT_CATRO |
| nicotiana_benthamiana_Niben261Chr01g1224027.1 | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| nicotiana_benthamiana_Niben261Chr01g1340007.1 | Terpenoid | UGT | medium | pass | UGT__00111__sp_Q9ZQ99_U73C1_ARATH |
| nicotiana_benthamiana_Niben261Chr01g1340011.1 | Terpenoid | UGT | medium | pass | UGT__00019__sp_A0A2R4LMF9_73C25_BARVU |
| nicotiana_benthamiana_Niben261Chr01g1713005.1 | Terpenoid | UGT | medium | pass | UGT__00044__sp_K4GIP0_73C12_BARVU |
| nicotiana_benthamiana_Niben261Chr01g1740004.1 | Terpenoid | UGT | medium | pass | UGT__00039__sp_K4D3V7_U76E1_SOLLC |
| nicotiana_benthamiana_Niben261Chr02g0079001.1 | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| nicotiana_benthamiana_Niben261Chr02g0082007.1 | Terpenoid | UGT | low | borderline | UGT__00078__sp_Q8W491_U73B3_ARATH |
| nicotiana_benthamiana_Niben261Chr02g0610001.1 | Terpenoid | UGT | medium | pass | UGT__00071__sp_Q6VAA6_U74G1_STERE |
| nicotiana_benthamiana_Niben261Chr02g0611007.1 | Terpenoid | UGT | low | borderline | UGT__00055__sp_O48676_U74B1_ARATH |
| nicotiana_benthamiana_Niben261Chr02g0778001.1 | Terpenoid | UGT | medium | pass | UGT__00055__sp_O48676_U74B1_ARATH |
| nicotiana_benthamiana_Niben261Chr02g1339003.1 | Terpenoid | UGT | medium | pass | UGT__00082__sp_Q9C9B0_U89B1_ARATH |
| nicotiana_benthamiana_Niben261Chr02g1339004.1 | Terpenoid | UGT | low | borderline | UGT__00082__sp_Q9C9B0_U89B1_ARATH |
| nicotiana_benthamiana_Niben261Chr02g1436005.1 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| nicotiana_benthamiana_Niben261Chr03g0167004.1 | Terpenoid | UGT | medium | pass | UGT__00063__sp_P0DO67_GT943_SIRGR |
| nicotiana_benthamiana_Niben261Chr03g0233002.1 | Terpenoid | UGT | medium | pass | UGT__00077__sp_Q8VZE9_U73B1_ARATH |
| nicotiana_benthamiana_Niben261Chr03g0233005.1 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| nicotiana_benthamiana_Niben261Chr03g0233013.1 | Terpenoid | UGT | medium | pass | UGT__00043__sp_K4GHS2_73C13_BARVU |
| nicotiana_benthamiana_Niben261Chr03g1315009.1 | Terpenoid | UGT | medium | pass | UGT__00079__sp_Q94A84_U72E1_ARATH |
| nicotiana_benthamiana_Niben261Chr03g1412004.1 | Terpenoid | UGT | medium | pass | UGT__00112__sp_Q9ZQG4_U73B5_ARATH |
| nicotiana_benthamiana_Niben261Chr03g1456006.1 | Terpenoid | UGT | medium | pass | UGT__00026__sp_D3THI6_U7A15_MALDO |
| nicotiana_benthamiana_Niben261Chr03g1511018.1 | Terpenoid | UGT | medium | pass | UGT__00060__sp_O82383_U71D1_ARATH |
| nicotiana_benthamiana_Niben261Chr03g1511030.1 | Terpenoid | UGT | medium | pass | UGT__00045__sp_K4GKX2_73C10_BARVU |