Nicotiana benthamiana (nicotiana_benthamiana)
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Imported from atlas release summary for Nicotiana benthamiana.
2798
Candidate Protein Records
2130
Pathway-Level Records
5341
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5341
Family-Level Calls
C4H
5.94%
C3'H/CYP98A
5.45%
POD
5.43%
BAHD
5.26%
4CL
4.12%
CYP76
3.48%
IFS
3.24%
UGT
3.18%
Other Families
63.9%
More Families (96)
T3O
163
3.05%
F3H
162
3.03%
7DLGT
150
2.81%
UFGT
145
2.71%
NMT
136
2.55%
DWF4/CYP90B1
132
2.47%
STR
117
2.19%
F3'H/CYP75B
109
2.04%
BR6OX2/CYP85A2
102
1.91%
CODM/T6ODM
96
1.8%
TPS
96
1.8%
H6H
92
1.72%
CYP71
80
1.5%
LAC
79
1.48%
CAD
76
1.42%
GES
69
1.29%
SMT1/SMT2/SMT3
69
1.29%
CSE
66
1.24%
IFR
61
1.14%
CAS
61
1.14%
PAL
54
1.01%
GS
53
0.99%
TRI/TRII
47
0.88%
SGD
46
0.86%
SLS
44
0.82%
T16H
40
0.75%
7DLH
39
0.73%
IO
38
0.71%
G8O/G8H
38
0.71%
F3'5'H/CYP75A
37
0.69%
COMT
37
0.69%
PYKS
35
0.66%
TAT
35
0.66%
NCS
33
0.62%
CYP90D1
33
0.62%
ANR
32
0.6%
CCR
32
0.6%
F5H/CYP84A
31
0.58%
CPD/CYP90A1
31
0.58%
RAS
30
0.56%
FNS
26
0.49%
ANS/LDOX
25
0.47%
BBE
23
0.43%
CYP51G1
23
0.43%
DFR
22
0.41%
HCT
22
0.41%
PMT
20
0.37%
16OMT
19
0.36%
8HGO
19
0.36%
BR6OX1/CYP85A1
19
0.36%
CNMT
18
0.34%
FPPS
18
0.34%
MPO
16
0.3%
HPPR
16
0.3%
SQS/FDFT1
16
0.3%
LAMT
14
0.26%
CCoAOMT
14
0.26%
CPR
14
0.26%
ROT3/CYP90C1
14
0.26%
CYP80B1
13
0.24%
COR
13
0.24%
AACT
13
0.24%
CHS
11
0.21%
DET2
10
0.19%
ISY
9
0.17%
GGPPS
9
0.17%
MVK
9
0.17%
DXS
9
0.17%
TYDC_DDC
8
0.15%
CYP719
8
0.15%
CHI
8
0.15%
SMO1/SMO2
8
0.15%
XMT_MXMT_DXMT
7
0.13%
HMGS
7
0.13%
MVD
7
0.13%
SQE
6
0.11%
HDR/IspH
6
0.11%
6OMT_4OMT_SOMT
5
0.09%
DWF1
5
0.09%
MCT/IspD
5
0.09%
HMGR
5
0.09%
HDS/IspG
5
0.09%
IDI
5
0.09%
ADC
4
0.07%
TDC
4
0.07%
FLS
4
0.07%
HYD1
4
0.07%
DWF7
4
0.07%
FK
3
0.06%
DWF5
3
0.06%
PMK
3
0.06%
ODC
2
0.04%
CPI1
2
0.04%
MDS/IspF
2
0.04%
DXR
2
0.04%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 594 | 19 | BAHD (206) | View species results |
| Phenylpropanoid pathway | 549 | 11 | POD (262) | View species results |
| Alkaloid pathway | 437 | 25 | NMT (68) | View species results |
| Flavonoid pathway | 234 | 12 | UFGT (114) | View species results |
| Rosmarinic acid pathway | 202 | 7 | C4H (75) | View species results |
| Steroid pathway | 114 | 12 | CAS (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1961 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 333 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| nicotiana_benthamiana_Niben261Chr03g1794002.1 | Terpenoid | UGT | medium | pass | UGT__00033__sp_F8WKW8_UGT9_GARJA |
| nicotiana_benthamiana_Niben261Chr04g0716006.1 | Terpenoid | UGT | medium | pass | UGT__00076__sp_Q8L7M0_TUN_ARATH |
| nicotiana_benthamiana_Niben261Chr04g0770001.1 | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| nicotiana_benthamiana_Niben261Chr04g0771009.1 | Terpenoid | UGT | low | borderline | UGT__00063__sp_P0DO67_GT943_SIRGR |
| nicotiana_benthamiana_Niben261Chr04g1336004.1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| nicotiana_benthamiana_Niben261Chr04g1336006.1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| nicotiana_benthamiana_Niben261Chr04g1336014.1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| nicotiana_benthamiana_Niben261Chr04g1547019.1 | Terpenoid | UGT | medium | pass | UGT__00071__sp_Q6VAA6_U74G1_STERE |
| nicotiana_benthamiana_Niben261Chr04g1784010.1 | Terpenoid | UGT | low | borderline | UGT__00084__sp_Q9FI99_U76C1_ARATH |
| nicotiana_benthamiana_Niben261Chr05g0055004.1 | Terpenoid | UGT | medium | pass | UGT__00043__sp_K4GHS2_73C13_BARVU |
| nicotiana_benthamiana_Niben261Chr05g0077001.1 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| nicotiana_benthamiana_Niben261Chr05g0608022.1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| nicotiana_benthamiana_Niben261Chr05g0865009.1 | Terpenoid | UGT | medium | pass | UGT__00039__sp_K4D3V7_U76E1_SOLLC |
| nicotiana_benthamiana_Niben261Chr05g1245001.1 | Terpenoid | UGT | medium | pass | UGT__00071__sp_Q6VAA6_U74G1_STERE |
| nicotiana_benthamiana_Niben261Chr05g1246002.1 | Terpenoid | UGT | medium | pass | UGT__00071__sp_Q6VAA6_U74G1_STERE |
| nicotiana_benthamiana_Niben261Chr05g1246006.1 | Terpenoid | UGT | medium | pass | UGT__00071__sp_Q6VAA6_U74G1_STERE |
| nicotiana_benthamiana_Niben261Chr05g1291012.1 | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| nicotiana_benthamiana_Niben261Chr06g0101003.1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| nicotiana_benthamiana_Niben261Chr06g0222005.1 | Terpenoid | UGT | low | borderline | UGT__00024__sp_B3VI56_U91D2_STERE |
| nicotiana_benthamiana_Niben261Chr06g0223003.1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| nicotiana_benthamiana_Niben261Chr06g0234001.1 | Terpenoid | UGT | medium | pass | UGT__00063__sp_P0DO67_GT943_SIRGR |
| nicotiana_benthamiana_Niben261Chr06g0243002.1 | Terpenoid | UGT | medium | pass | UGT__00063__sp_P0DO67_GT943_SIRGR |
| nicotiana_benthamiana_Niben261Chr06g0243008.1 | Terpenoid | UGT | medium | pass | UGT__00063__sp_P0DO67_GT943_SIRGR |
| nicotiana_benthamiana_Niben261Chr06g0334013.1 | Terpenoid | UGT | medium | pass | UGT__00031__sp_F8WKW0_UGT1_GARJA |
| nicotiana_benthamiana_Niben261Chr06g0363013.1 | Terpenoid | UGT | medium | pass | UGT__00065__sp_P0DO72_GT942_SIRGR |
| nicotiana_benthamiana_Niben261Chr06g0363015.1 | Terpenoid | UGT | medium | pass | UGT__00079__sp_Q94A84_U72E1_ARATH |
| nicotiana_benthamiana_Niben261Chr06g1116022.1 | Terpenoid | UGT | low | borderline | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| nicotiana_benthamiana_Niben261Chr06g1139007.1 | Terpenoid | UGT | medium | pass | UGT__00077__sp_Q8VZE9_U73B1_ARATH |
| nicotiana_benthamiana_Niben261Chr06g1481006.1 | Terpenoid | UGT | medium | pass | UGT__00086__sp_Q9LFJ8_U78D2_ARATH |
| nicotiana_benthamiana_Niben261Chr07g0313010.1 | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| nicotiana_benthamiana_Niben261Chr07g0762005.1 | Terpenoid | UGT | medium | pass | UGT__00116__sp_U3UA11_UGT7_CATRO |
| nicotiana_benthamiana_Niben261Chr07g1012025.1 | Terpenoid | UGT | medium | pass | UGT__00014__sp_A0A172J2G3_UGT43_PUEML |
| nicotiana_benthamiana_Niben261Chr07g1224008.1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| nicotiana_benthamiana_Niben261Chr07g1441008.1 | Terpenoid | UGT | medium | pass | UGT__00034__sp_F8WLS6_UGT6_CATRO |
| nicotiana_benthamiana_Niben261Chr08g0191011.1 | Terpenoid | UGT | low | borderline | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| nicotiana_benthamiana_Niben261Chr08g0797006.1 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| nicotiana_benthamiana_Niben261Chr08g1133009.1 | Terpenoid | UGT | medium | pass | UGT__00110__sp_Q9ZQ95_U73C6_ARATH |
| nicotiana_benthamiana_Niben261Chr09g0023023.1 | Terpenoid | UGT | medium | pass | UGT__00029__sp_D3UAG2_U71K2_PYRCO |
| nicotiana_benthamiana_Niben261Chr09g0051001.1 | Terpenoid | UGT | medium | pass | UGT__00038__sp_K4CWS6_U75C1_SOLLC |
| nicotiana_benthamiana_Niben261Chr09g0051003.1 | Terpenoid | UGT | medium | pass | UGT__00038__sp_K4CWS6_U75C1_SOLLC |
| nicotiana_benthamiana_Niben261Chr09g0051006.1 | Terpenoid | UGT | medium | pass | UGT__00038__sp_K4CWS6_U75C1_SOLLC |
| nicotiana_benthamiana_Niben261Chr09g0051008.1 | Terpenoid | UGT | medium | pass | UGT__00038__sp_K4CWS6_U75C1_SOLLC |
| nicotiana_benthamiana_Niben261Chr09g0052007.1 | Terpenoid | UGT | medium | pass | UGT__00038__sp_K4CWS6_U75C1_SOLLC |
| nicotiana_benthamiana_Niben261Chr09g0152006.1 | Terpenoid | UGT | medium | pass | UGT__00063__sp_P0DO67_GT943_SIRGR |
| nicotiana_benthamiana_Niben261Chr09g0791007.1 | Terpenoid | UGT | medium | pass | UGT__00034__sp_F8WLS6_UGT6_CATRO |
| nicotiana_benthamiana_Niben261Chr09g1128010.1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| nicotiana_benthamiana_Niben261Chr09g1249007.1 | Terpenoid | UGT | medium | pass | UGT__00019__sp_A0A2R4LMF9_73C25_BARVU |
| nicotiana_benthamiana_Niben261Chr09g1279010.1 | Terpenoid | UGT | medium | pass | UGT__00112__sp_Q9ZQG4_U73B5_ARATH |
| nicotiana_benthamiana_Niben261Chr09g1281001.1 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| nicotiana_benthamiana_Niben261Chr09g1281002.1 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |