PlantSME Plant secondary metabolism enzyme database

Ocimum sanctum (ocimum_sanctum)

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Imported from atlas release summary for Ocimum sanctum.

1854
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 33.76% Alkaloid pathway 21.9% Phenylpropanoid pathway 20.5% Flavonoid pathway 10.41% Rosmarinic acid pathway 8.63% Steroid pathway 4.8%
Family Distribution
C4H 6.98% BAHD 6.15% C3'H/CYP98A 5.31% CYP76 4.28% 4CL 4.05% UGT 3.79% IFS 3.23% POD 3.21%
Other Families 63.0%
More Families (96)
7DLGT 139 2.98% DWF4/CYP90B1 123 2.63% UFGT 120 2.57% F3'H/CYP75B 118 2.53% F3H 105 2.25% T3O 98 2.1% TPS 94 2.01% T16H 89 1.91% CAD 88 1.88% NMT 86 1.84% G8O/G8H 79 1.69% GES 78 1.67% CODM/T6ODM 76 1.63% CYP71 73 1.56% STR 69 1.48% LAC 66 1.41% BR6OX2/CYP85A2 63 1.35% CAS 61 1.31% FNS 55 1.18% F5H/CYP84A 54 1.16% HCT 50 1.07% SMT1/SMT2/SMT3 45 0.96% H6H 42 0.9% IO 42 0.9% TRI/TRII 39 0.84% GS 38 0.81% IFR 37 0.79% DFR 37 0.79% RAS 37 0.79% PYKS 36 0.77% PMT 36 0.77% F3'5'H/CYP75A 35 0.75% CSE 35 0.75% CYP90D1 35 0.75% CPD/CYP90A1 30 0.64% COMT 28 0.6% SLS 27 0.58% 7DLH 27 0.58% PAL 27 0.58% CCR 27 0.58% BBE 24 0.51% NCS 23 0.49% 8HGO 23 0.49% ANS/LDOX 23 0.49% TAT 23 0.49% ANR 19 0.41% LAMT 18 0.39% 16OMT 18 0.39% SGD 16 0.34% COR 15 0.32% FPPS 15 0.32% CYP80B1 14 0.3% ROT3/CYP90C1 14 0.3% CHS 13 0.28% CCoAOMT 13 0.28% CPR 13 0.28% BR6OX1/CYP85A1 13 0.28% 6OMT_4OMT_SOMT 12 0.26% MPO 12 0.26% HPPR 11 0.24% GGPPS 11 0.24% DXS 11 0.24% CYP51G1 10 0.21% ISY 9 0.19% SQE 9 0.19% AACT 9 0.19% HMGR 9 0.19% CYP719 8 0.17% CNMT 8 0.17% TYDC_DDC 8 0.17% SQS/FDFT1 7 0.15% SMO1/SMO2 7 0.15% HDR/IspH 6 0.13% CHI 5 0.11% MVD 5 0.11% MVK 4 0.09% ADC 3 0.06% TDC 3 0.06% CYP80F1 3 0.06% FLS 3 0.06% HMGS 3 0.06% IDI 3 0.06% CMK/IspE 3 0.06% XMT_MXMT_DXMT 2 0.04% DET2 2 0.04% FK 2 0.04% CPI1 2 0.04% DXR 2 0.04% PMK 2 0.04% DWF5 1 0.02% DWF7 1 0.02% DWF1 1 0.02% HYD1 1 0.02% MDS/IspF 1 0.02% MCT/IspD 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 626 20 BAHD (219) View species results
Alkaloid pathway 406 27 GES (68) View species results
Phenylpropanoid pathway 380 13 POD (132) View species results
Flavonoid pathway 193 13 UFGT (88) View species results
Rosmarinic acid pathway 160 7 4CL (45) View species results
Steroid pathway 89 10 CAS (44) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1880 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status Best Target
ocimum_sanctum_Ote100003260001 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
ocimum_sanctum_Ote100013310041 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
ocimum_sanctum_Ote100035960011 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
ocimum_sanctum_Ote100040960011 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
ocimum_sanctum_Ote100072100001 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
ocimum_sanctum_Ote100072100021 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
ocimum_sanctum_Ote100115280111 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
ocimum_sanctum_Ote100125440031 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
ocimum_sanctum_Ote100161130001 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
ocimum_sanctum_Ote100161130021 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
ocimum_sanctum_Ote100161520011 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
ocimum_sanctum_Ote100161520031 Alkaloid COR low borderline COR__00003__sp_Q9SQ68_COR13_PAPSO
ocimum_sanctum_Ote100185780011 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
ocimum_sanctum_Ote100185780021 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
ocimum_sanctum_Ote100251830091 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO