Ocimum sanctum (ocimum_sanctum)
/
Imported from atlas release summary for Ocimum sanctum.
1854
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1854
Candidate Genes
C4H
6.98%
BAHD
6.15%
C3'H/CYP98A
5.31%
CYP76
4.28%
4CL
4.05%
UGT
3.79%
IFS
3.23%
POD
3.21%
Other Families
63.0%
More Families (96)
7DLGT
139
2.98%
DWF4/CYP90B1
123
2.63%
UFGT
120
2.57%
F3'H/CYP75B
118
2.53%
F3H
105
2.25%
T3O
98
2.1%
TPS
94
2.01%
T16H
89
1.91%
CAD
88
1.88%
NMT
86
1.84%
G8O/G8H
79
1.69%
GES
78
1.67%
CODM/T6ODM
76
1.63%
CYP71
73
1.56%
STR
69
1.48%
LAC
66
1.41%
BR6OX2/CYP85A2
63
1.35%
CAS
61
1.31%
FNS
55
1.18%
F5H/CYP84A
54
1.16%
HCT
50
1.07%
SMT1/SMT2/SMT3
45
0.96%
H6H
42
0.9%
IO
42
0.9%
TRI/TRII
39
0.84%
GS
38
0.81%
IFR
37
0.79%
DFR
37
0.79%
RAS
37
0.79%
PYKS
36
0.77%
PMT
36
0.77%
F3'5'H/CYP75A
35
0.75%
CSE
35
0.75%
CYP90D1
35
0.75%
CPD/CYP90A1
30
0.64%
COMT
28
0.6%
SLS
27
0.58%
7DLH
27
0.58%
PAL
27
0.58%
CCR
27
0.58%
BBE
24
0.51%
NCS
23
0.49%
8HGO
23
0.49%
ANS/LDOX
23
0.49%
TAT
23
0.49%
ANR
19
0.41%
LAMT
18
0.39%
16OMT
18
0.39%
SGD
16
0.34%
COR
15
0.32%
FPPS
15
0.32%
CYP80B1
14
0.3%
ROT3/CYP90C1
14
0.3%
CHS
13
0.28%
CCoAOMT
13
0.28%
CPR
13
0.28%
BR6OX1/CYP85A1
13
0.28%
6OMT_4OMT_SOMT
12
0.26%
MPO
12
0.26%
HPPR
11
0.24%
GGPPS
11
0.24%
DXS
11
0.24%
CYP51G1
10
0.21%
ISY
9
0.19%
SQE
9
0.19%
AACT
9
0.19%
HMGR
9
0.19%
CYP719
8
0.17%
CNMT
8
0.17%
TYDC_DDC
8
0.17%
SQS/FDFT1
7
0.15%
SMO1/SMO2
7
0.15%
HDR/IspH
6
0.13%
CHI
5
0.11%
MVD
5
0.11%
MVK
4
0.09%
ADC
3
0.06%
TDC
3
0.06%
CYP80F1
3
0.06%
FLS
3
0.06%
HMGS
3
0.06%
IDI
3
0.06%
CMK/IspE
3
0.06%
XMT_MXMT_DXMT
2
0.04%
DET2
2
0.04%
FK
2
0.04%
CPI1
2
0.04%
DXR
2
0.04%
PMK
2
0.04%
DWF5
1
0.02%
DWF7
1
0.02%
DWF1
1
0.02%
HYD1
1
0.02%
MDS/IspF
1
0.02%
MCT/IspD
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 626 | 20 | BAHD (219) | View species results |
| Alkaloid pathway | 406 | 27 | GES (68) | View species results |
| Phenylpropanoid pathway | 380 | 13 | POD (132) | View species results |
| Flavonoid pathway | 193 | 13 | UFGT (88) | View species results |
| Rosmarinic acid pathway | 160 | 7 | 4CL (45) | View species results |
| Steroid pathway | 89 | 10 | CAS (44) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1880 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 374 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| ocimum_sanctum_Ote100204540091 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote100217990001 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote100220790041 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote100233180011 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote100233510041 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote100246790021 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote100249340011 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote100249370041 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote100249370101 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote100260680081 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote100260680101 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote100262150011 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote100268630001 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote100269440061 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote100276160011 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote100276680041 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote100278270021 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote237490630001 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ocimum_sanctum_Ote237938390001 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |